Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0049 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAGAGGGCCATGGTCTCCTGAAGAAGATGCTACTCTCAGAAACTATGTTCAGACTCATGGCATTGGTGGAAATTGGATTGCTTTGCCAAGGAAAGCTGGCCTGAGGCGTTGCGGCAAGAGTTGCAGATTGAGGTGGCTCAACTATCTCAGGCCAGACATCAAACATGGTGGTTTTACTGAGGAGGAAGACAAAGTCATATGTGCCATCTATAATCAAATGGGAAGCAGATGGTCTGTCATAGCTTCTCAACTTCCAGGAAGAACAGACAATGATGTCAAGAACTACTGGAACACCAAACTGAAGAAGAAACTAGCCAAATTTCACAGCAATGGCAATGCTGCTAACAACCCTAATCCTTTCAGCTCGGCTCCACCGCCTACCGCTGCTCCTATGCCGGTAACCGAAGCCTACCGTCATGGTTTTCCGCCATTGCTGACTCAAGGTTATACTGGTACAAGTAATAATATGGGAGTATCAGAATTTGGTGCAAGTTCTAATAATGGTCACAATGTTTTCATATCTGATCAAGGTGGTTTGAGTACCGATCATGCTACTGGTATATCTTATGTGAGCTACTTGCCCGGTACCCGAGGCGGGGAAGATGATGGGGTTTTGATGGATTTTGGGATGGGAAATCTTCCATATGATATCATCAGTGGCTTCTGGTTTCAGGAGAAGGACAGTACTGAAGTTACTCCAGGTTCAGCAAGTTTGGATGAGTTTCCCCATCTCAACATTAAGCCACAAGGATTGTGA 795 0.4553 MGRAPCCDKANVKRGPWSPEEDATLRNYVQTHGIGGNWIALPRKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDKVICAIYNQMGSRWSVIASQLPGRTDNDVKNYWNTKLKKKLAKFHSNGNAANNPNPFSSAPPPTAAPMPVTEAYRHGFPPLLTQGYTGTSNNMGVSEFGASSNNGHNVFISDQGGLSTDHATGISYVSYLPGTRGGEDDGVLMDFGMGNLPYDIISGFWFQEKDSTEVTPGSASLDEFPHLNIKPQGL* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0049 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vvi4g0049 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Vvi4g0049 264 CDD SANT 71 113 IPR001005 -
Vvi4g0049 264 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Vvi4g0049 264 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Vvi4g0049 264 PANTHER OS09G0431300 PROTEIN 1 137 - -
Vvi4g0049 264 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Vvi4g0049 264 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Vvi4g0049 264 CDD SANT 16 62 IPR001005 -
Vvi4g0049 264 Gene3D - 70 133 - -
Vvi4g0049 264 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Vvi4g0049 264 SMART sant 13 64 IPR001005 -
Vvi4g0049 264 SMART sant 67 115 IPR001005 -
Vvi4g0049 264 Gene3D - 7 68 - -
Vvi4g0049 264 FunFam Transcription factor RAX3 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0049 Vvi-Chr4 550891 552122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0049 1 117 MYB Transcription Factor Family AT5G65790 79.487 1.00e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi4g0049 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0049 K09422 - vvi:100266257 521.931