Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0048 ATGATGATCGGAGAGCCAACTCGATCCAATCCGACGGTGCAGGTTCCTCCGTGGGACCCTTACGATGATCCAACGGCTGGGATGGGTTCTCCGTTCCCAGTTAGTGGAGTTAATTTCAACGGCAATGCCGCTAGTCCCACCGGCGGTGATTATAACCCGTTTATAATCAGCGAGGCCTTCTCTTCACTGCAGCGTTACCTGCCATCAAACGAGTTCGGGACCGAGTCCGGCGATGAGTCGGAGACGGTGGTGGACGCGTTCTCATGCGATCAGTTTCGTATGTTTGAGTTTAAAGTGCGGAGGTGCGCACGTGGGAGGTCACATGACTGGACAGAGTGTCCGTACGCGCATCCTGGGGAAAAGGCTCGCCGGAGGGACCCCCGGAAGTTTCACTACTCTGGCACGGCGTGCCCGGAGTTTCGGAAAGGAAACTGCAAGAAGGGCGATTCATGCGAGTTTGCTCATGGCGTGTTCGAGTGCTGGCTCCACCCTGCTCGTTACCGGACTCAGCCTTGCAAGGATGGGTCCGGTTGCCGCCGGCGAGTATGTTTCTTTGCTCACACGCCGGAGCAGCTCCGGGTTCTTCCTCAGCAGAGTCCTAGGAATCATGGGTCGGCCGAGTCATACGACGGCTCACCTCTCCGACTCGCTTTTGACCCGTATCTGTCCAAGGGTTCATTTATTTCATCTCCGACTTCGACTCTGATATCGCCGCCGGTGTCGCCACCCTCTGACTCGCCACCCATGTCGCCGAATAGCCCATCCTTTACTGGCTCATTCAACTCGATGAGCGAACTCGTGGCGTCCATGAGAAATCTACAAGTTGGGAAGGCGAAAATGAGCCCTCAATCATGGGGAGTCCAAATGGGATCCGGTTTCGGATCTCCTCGCGGCTCAACCCTGCGCCCAGGGTTCTGTAGCCTCCCTTCCACCCCCACTCGAACTCCGGCTCGCTCCGGACTCGGTGGCCTCGACGTCTGGGACAAGACTTGCGAGGAAGAGCCAGCAATGGAGAGGGTTGAGTCTGGAAGAGACTTGCGTGCAAGAATATACGCTAAAATCAGCAAAGAAAACTCACTGGATCGAGACTCGTCCCCCTCTGCCCCTGACTTTGGCTGGGTCTCAGAGCTGGTGAAGTGA 1140 0.5667 MMIGEPTRSNPTVQVPPWDPYDDPTAGMGSPFPVSGVNFNGNAASPTGGDYNPFIISEAFSSLQRYLPSNEFGTESGDESETVVDAFSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPEFRKGNCKKGDSCEFAHGVFECWLHPARYRTQPCKDGSGCRRRVCFFAHTPEQLRVLPQQSPRNHGSAESYDGSPLRLAFDPYLSKGSFISSPTSTLISPPVSPPSDSPPMSPNSPSFTGSFNSMSELVASMRNLQVGKAKMSPQSWGVQMGSGFGSPRGSTLRPGFCSLPSTPTRTPARSGLGGLDVWDKTCEEEPAMERVESGRDLRARIYAKISKENSLDRDSSPSAPDFGWVSELVK* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0048 379 Gene3D - 132 194 - -
Vvi4g0048 379 SMART c3hfinal6 166 189 IPR000571 GO:0046872
Vvi4g0048 379 SMART c3hfinal6 131 157 IPR000571 GO:0046872
Vvi4g0048 379 MobiDBLite consensus disorder prediction 232 258 - -
Vvi4g0048 379 FunFam Zinc finger CCCH domain-containing protein 66 89 157 - -
Vvi4g0048 379 MobiDBLite consensus disorder prediction 236 250 - -
Vvi4g0048 379 ProSiteProfiles Zinc finger C3H1-type profile. 132 158 IPR000571 GO:0046872
Vvi4g0048 379 MobiDBLite consensus disorder prediction 357 379 - -
Vvi4g0048 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 136 156 IPR000571 GO:0046872
Vvi4g0048 379 PANTHER UNKEMPT FAMILY MEMBER 59 379 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0048 Vvi-Chr4 541014 542153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0048 87 195 C2H2 Transcription Factor Family AT5G12850 72.477 1.33e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi4g0048 zf-CCCH 5.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0048 - - vvi:100247549 761.525