Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0041 ATGGCGATCGCCGCAGAGACTCAACCTCAGGAGAAGGCTTCTTCAGATGTTCCAGCAGTGGAGAAAAAAAGGTGGACCCTAAATGACTTTGACATTGGAAAGCCCCTGGGGCGAGGAAAGTTCGGTCATGTCTATTTGGCGAGGGAAAAGAGAAGCAATCATATTGTGGCCCTAAAAGTGCTCTTCAAGAGCCAACTGCAACAGTCTCAGGTTGAGCATCAGCTTCGCCGGGAAGTTGAAATACAAAGTCATCTTCGACACCCCAATATCTTGCGCCTTTATGGGTACTTTTATGATCAGAAACGAGTGTATTTGATATTAGAATATGCGGCCAAAGGTGAACTCTACAAGGAACTACAGAAGTGTAAATACTTCAGTGAAAGGCGTGCTGCTACTTACGTTGCTTCATTAGCTCGGGCTCTCATATATTGCCATGGGAAGCATGTAATACACAGAGACATCAAACCTGAGAACCTGTTAGTTGGGGCACAGGGTGAACTTAAGATTGCAGATTTTGGATGGTCAGTGCACACATTTAACCGCAGAAGGACCATGTGTGGCACACTGGACTACCTTCCACCTGAGATGGTGGAGAGTGTGGAGCATGATGCTAGTGTGGACATATGGAGCCTTGGTGTACTTTGCTATGAGTTTCTTTATGGGGTTCCTCCTTTTGAGGCTAAGGAACACTCAGACACCTACAGAAGGATTGTGCAAGTTGATTTAAAGTTCCCCCCAAAACCAATAGTCTCTTCTACAGCGAAGGACCTCATCAGTCAGATGCTGGTGAAGGATTCTTCGCAGCGGCTCCCACTACACAAGCTCCTTGAGCATCCCTGGATCGTTCAGAATGCAGATCCCTCTGGTGTCTATAGGGCTTGA 882 0.4683 MAIAAETQPQEKASSDVPAVEKKRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLVGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRRIVQVDLKFPPKPIVSSTAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNADPSGVYRA* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0041 293 ProSiteProfiles Protein kinase domain profile. 30 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0041 293 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Vvi4g0041 293 Gene3D Phosphorylase Kinase; domain 1 18 113 - -
Vvi4g0041 293 PIRSF ILK 3 278 - -
Vvi4g0041 293 Gene3D Transferase(Phosphotransferase) domain 1 114 289 - -
Vvi4g0041 293 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Vvi4g0041 293 CDD STKc_Aurora 29 282 - -
Vvi4g0041 293 SUPERFAMILY Protein kinase-like (PK-like) 16 286 IPR011009 -
Vvi4g0041 293 SMART serkin_6 30 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0041 293 FunFam serine/threonine-protein kinase Aurora-1 114 289 - -
Vvi4g0041 293 Pfam Protein kinase domain 32 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0041 293 FunFam Aurora kinase A 22 113 - -
Vvi4g0041 293 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 9 292 IPR030616 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0041 Vvi-Chr4 466811 470072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0041 21 292 CBL-interacting serine-threonine protein kinases AT5G10930 35.125 1.08e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vvi4g0041 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0041 K08850 - vvi:100268070 597.43