Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0033 ATGTCGAAACCACTATTTTTATTTGCCAAAATTTCATTCCCCGCTCTGTTTCTCCTCCTAGTCCTCTTCTTACCCCTTCAAATAATTTCCCAAAATCTGCATGATGAACGATCAATCCTCCTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCTTCATCCTCGCCCTGTGATTGGCCGGAAATTACATGCACCAACAATACCATCATTGCAATTTCGCTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCATACTTGACCTCTCCAACAATTACATTCCCGGTGAGTTCCCGGATATTCTCAATTGTTCCAAGCTTGAGTATCTGCTCTTGTTGCAAAACTCCTTCGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTTCGGTACCTAGACCTCACCGCAAACAATTTCTCTGGAGATATTCCTACAGCAATTGGGCGGCTACGGGAGCTGTTCTACTTGTTTTTGGTCCAAAACGAGTTCAACGGCACCTGGCCAAAGGAGATTGGTAATTTGGCGAATCTTGAACATTTGGTCATGGCCTATAATAACAAATTCCTGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGAAGTATCTGTGGATGAAACAGGCGAATTTGATCGGGGAAATACCGGAGAGCTTCAACAATCTATGGAGTCTGGAACACTTGGATCTCTCACTCAACAAATTGGAAGGCACGATCCCAGGAGGCATGCTTATGTTGAAGAATTTGACTAATTTGTATTTATTCAATAATAGATTGTCCGGCCGCATTCCTATGACCATAGAAGCTCTCAACTTGAAAGAAATTGATCTTTCCAAGAACTATTTGACGGGGCCGATACCAACGGGTTTCGGGAAGCTACAAAATTTGACGAGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACATTGGAAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCGGAGCTCAAACGCTTTGAGGTTTCCGAGAATAAACTAAGCGGGAAATTACCTCAACATTTATGCGCAAGGGGGGCTTTGCTTGGAGTGGTTGTTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCACAAGTTTGCTCACAATTCAGCTTTCCAACAATTGCTTTTCAAGCGAGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATCGGTGATGTTATCTGGAAATTCATTCTCGGGGGCACTTCCAAGTAGATTGGCAAGGAATTTGTCCAGAGTGGATATCAGTAACAACAAGTTTTCTGGTCCAATTCCTGCTGAAATCTCTTCTTGGATGAACATAGGTGTGCTCATTGCCAACAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCTCTATTCTGTTGCTTAACGGGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCACTCACTAATTTGAATCTCTCAAGAAACAAACTTTCAGGCCTAATTCCCAAGGCATTAGGTTCTTTAACTAGCCTTACTTACCTTGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTTCTGAACTTGGTCATTTGAAGCTTAATATCCTCGATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAATATGGAGGATATGAACACAGTTTCTTGAACAATCCCAAGCTGTGTGTCAATGTTGGCACTTTAAAACTCCCTAGATGTGATGTCAAAGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTCGCTCTATCTGGTTTCCTAGTTGTTGTTTTCTTTACCCTGTTCATGGTTCGAGACTATCACAGGAAGAATCACAGTCGAGACCATACAACTTGGAAGCTTACTCGATTCCAAAATCTGGATTTCGATGAACATAACATATTGTCCGGTTTGACAGAAAATAATTTGATCGGACGTGGTGGGTCAGGGAAAGTATACCGAATTGCTAATAACCGTTCTGGTGAACTCCTAGCAGTTAAAAGGATTTGTAATAACAGGAGATTGGATCACAAGCTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAAGTTCAAGCCTTCTTGTTTATGAGTACATGGAGAGTCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATCGTCCATGACAAGTTCAGTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATCGGAGCTGCAAAAGGCCTACGCCACATGCATGAATACTGTTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCTGAGTTCAACGCGAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGGCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTGGTGACGGGGAGAGAACCCAACAGCGGGAACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTCAGAGAAGAGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAAGAATGTGACACAGCACAAGTGACCACTCTCTTCACTCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAAGAGGTTTTGGAAATTCTTCGACAGTGCAATCCTCAGGAGGGGCATGGAAGAAAGAAAAAGGACCATGAAGTTGCACCCCTACTTCAAAATGGCACTTACCCCGCTACTAACAAGCATAGCGACAAGGGATCAAACAATGAGGATGACGATGTACACCCCAGCTTCAAAATTTACCGCTTGTAA 3090 0.4353 MSKPLFLFAKISFPALFLLLVLFLPLQIISQNLHDERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEITCTNNTIIAISLHNKTIREKIPATICDLKNLIILDLSNNYIPGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTANNFSGDIPTAIGRLRELFYLFLVQNEFNGTWPKEIGNLANLEHLVMAYNNKFLPSALPKEFGALKKLKYLWMKQANLIGEIPESFNNLWSLEHLDLSLNKLEGTIPGGMLMLKNLTNLYLFNNRLSGRIPMTIEALNLKEIDLSKNYLTGPIPTGFGKLQNLTSLNLFWNQLSGEIPANISLIPTLETFKVFSNQLSGVLPPAFGLHSELKRFEVSENKLSGKLPQHLCARGALLGVVVSNNNLSGEVPKSLGNCTSLLTIQLSNNCFSSEIPSGIWTSPDMVSVMLSGNSFSGALPSRLARNLSRVDISNNKFSGPIPAEISSWMNIGVLIANNNMLSGKIPVELTSLWNISILLLNGNQFSGELPSQIISWKSLTNLNLSRNKLSGLIPKALGSLTSLTYLDLSENQFSGQIPSELGHLKLNILDLSSNQLSGMVPIEFQYGGYEHSFLNNPKLCVNVGTLKLPRCDVKVVDSDKLSTKYLVMILIFALSGFLVVVFFTLFMVRDYHRKNHSRDHTTWKLTRFQNLDFDEHNILSGLTENNLIGRGGSGKVYRIANNRSGELLAVKRICNNRRLDHKLQKQFIAEVEILGTIRHSNIVKLLCCISNESSSLLVYEYMESQSLDRWLHGKKQRTSSMTSSVHNFVLDWPTRLQIAIGAAKGLRHMHEYCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEADTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNSGNEHMCLVEWAWDQFREEKTIEEVMDEEIKEECDTAQVTTLFTLGLMCTTTLPSTRPTMKEVLEILRQCNPQEGHGRKKKDHEVAPLLQNGTYPATNKHSDKGSNNEDDDVHPSFKIYRL* 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0033 1029 SMART serkin_6 692 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0033 1029 MobiDBLite consensus disorder prediction 999 1029 - -
Vvi4g0033 1029 Gene3D Ribonuclease Inhibitor 27 84 IPR032675 -
Vvi4g0033 1029 Gene3D Ribonuclease Inhibitor 85 288 IPR032675 -
Vvi4g0033 1029 ProSitePatterns Protein kinases ATP-binding region signature. 698 721 IPR017441 GO:0005524
Vvi4g0033 1029 ProSiteProfiles Leucine-rich repeat profile. 575 596 IPR001611 GO:0005515
Vvi4g0033 1029 Gene3D Ribonuclease Inhibitor 289 385 IPR032675 -
Vvi4g0033 1029 PANTHER OS04G0122200 PROTEIN 46 186 - -
Vvi4g0033 1029 ProSitePatterns Serine/Threonine protein kinases active-site signature. 827 839 IPR008271 GO:0004672|GO:0006468
Vvi4g0033 1029 MobiDBLite consensus disorder prediction 1010 1029 - -
Vvi4g0033 1029 FunFam Receptor-like protein kinase HSL1 672 771 - -
Vvi4g0033 1029 SUPERFAMILY L domain-like 374 594 - -
Vvi4g0033 1029 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Vvi4g0033 1029 SMART LRR_typ_2 143 167 IPR003591 -
Vvi4g0033 1029 SMART LRR_typ_2 526 549 IPR003591 -
Vvi4g0033 1029 SMART LRR_typ_2 408 432 IPR003591 -
Vvi4g0033 1029 SMART LRR_typ_2 96 119 IPR003591 -
Vvi4g0033 1029 SMART LRR_typ_2 241 265 IPR003591 -
Vvi4g0033 1029 SMART LRR_typ_2 550 574 IPR003591 -
Vvi4g0033 1029 SMART LRR_typ_2 312 336 IPR003591 -
Vvi4g0033 1029 SUPERFAMILY L domain-like 44 378 - -
Vvi4g0033 1029 Gene3D Ribonuclease Inhibitor 386 625 IPR032675 -
Vvi4g0033 1029 Gene3D Transferase(Phosphotransferase) domain 1 772 1001 - -
Vvi4g0033 1029 ProSiteProfiles Protein kinase domain profile. 692 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0033 1029 Pfam Leucine rich repeat 528 586 IPR001611 GO:0005515
Vvi4g0033 1029 Pfam Protein kinase domain 694 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0033 1029 SUPERFAMILY Protein kinase-like (PK-like) 682 975 IPR011009 -
Vvi4g0033 1029 FunFam Kinase family with leucine-rich repeat domain-containing protein 772 992 - -
Vvi4g0033 1029 FunFam Receptor-like protein kinase HSL1 33 187 - -
Vvi4g0033 1029 Gene3D Phosphorylase Kinase; domain 1 675 771 - -
Vvi4g0033 1029 FunFam Uncharacterized protein 334 624 - -
Vvi4g0033 1029 FunFam Uncharacterized protein 209 288 - -
Vvi4g0033 1029 Pfam Leucine Rich repeat 312 328 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0033 Vvi-Chr4 397192 400374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0033 24 1020 Receptor kinase-like Gene Family AT5G25930 55.045 0.0 1050
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0033 Pkinase 3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0033 K00924 - vvi:104878975 2030.76