Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0032 ATGTTAGCTGGAAATTCATTCTCGAGGGCACTTCCAAGTAAATTGGCAAGGAATTTGTCCAGAGTGGATATCAGTAACAATAAGTTTTCTGGTCAAATTCCTGCTAAAATCTCTTCTTGGATGAACATCGGTGTGTTCAATGCCGACAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCACTCTTTGGAACATCTCTGTTCTGTTGCTTGATGGGAATCAATTCTTTGGTGAACTTCCATCCCAAATCATCTCATGGAAGTCGCTCGCTAATTTGAATCTCTCAAGAAACAAACTTTCAGGCCTAATTCCCAAGGCATTTGGTTCTTTAACTAGCCTTACTTACCTCGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTTCTGAACTTGGTCATTTGAAGCTTAATATCCTCGATCTTTCGTTCAACCAACTCTCTAGGATGGTCCCCATTGAGTATCAAAATGGAGCATACAATTATAGTTTCTTGAACAATCCCAAGCTGTGTGTCAATGTTTCCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCGTTATGCTCCTAATTTTCGCTCTATTTGGTTTCTTAGTTGTTGTTTTCTTTACCCTGTTCATGCTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTGTTGCATATCGAATGAAAGCTCAAGCCTTCTTGTTTATGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACAACATCCATGACAAGTTCAGTCCATAACTTTGTCTTTGATTGGCCAACAAGGTTGCAGATTGTTATCAGAGCTACAAAAGGTCTATGCCACATGCATGAAAACTACTCTGCCTTGACCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGTGAAAACTACGGATTTTGGATTGGCTAAGATATTGGTCAAGCAAGGAGAGCCTAACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATCGCACCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAACTAGTGATGAAGAGAGAACCCAACAGCAGGGACGAGCACATGTGCCTTGTAGAATGGGCATGGGATTAG 1230 0.413 MLAGNSFSRALPSKLARNLSRVDISNNKFSGQIPAKISSWMNIGVFNADNNMLSGKIPVELTTLWNISVLLLDGNQFFGELPSQIISWKSLANLNLSRNKLSGLIPKAFGSLTSLTYLDLSENQFSGQIPSELGHLKLNILDLSFNQLSRMVPIEYQNGAYNYSFLNNPKLCVNVSTLKLPRCDAKVVDSDKLSTKYLVMLLIFALFGFLVVVFFTLFMLQKQFIAEVEILGTIRHSNIVKLLCCISNESSSLLVYEYMEKQSLDRWLHGKKQRTTSMTSSVHNFVFDWPTRLQIVIRATKGLCHMHENYSALTIHRDVKSSNILLDAEFNVKTTDFGLAKILVKQGEPNTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVMKREPNSRDEHMCLVEWAWD* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0032 409 ProSiteProfiles Protein kinase domain profile. 150 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0032 409 FunFam Kinase family with leucine-rich repeat domain-containing protein 17 190 - -
Vvi4g0032 409 Pfam Protein kinase domain 221 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0032 409 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 2 401 - -
Vvi4g0032 409 Gene3D Ribonuclease Inhibitor 1 189 IPR032675 -
Vvi4g0032 409 SMART serkin_6 187 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0032 409 FunFam - 216 407 - -
Vvi4g0032 409 PRINTS Leucine-rich repeat signature 112 125 - -
Vvi4g0032 409 PRINTS Leucine-rich repeat signature 91 104 - -
Vvi4g0032 409 SUPERFAMILY L domain-like 2 158 - -
Vvi4g0032 409 ProSiteProfiles Leucine-rich repeat profile. 137 158 IPR001611 GO:0005515
Vvi4g0032 409 Gene3D Transferase(Phosphotransferase) domain 1 216 407 - -
Vvi4g0032 409 Pfam Leucine rich repeat 90 148 IPR001611 GO:0005515
Vvi4g0032 409 SUPERFAMILY Protein kinase-like (PK-like) 219 401 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0032 Vvi-Chr4 379923 381470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0032 220 408 Receptor kinase-like Gene Family AT5G25930 67.368 9.19e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0032 Pkinase 1.3e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0032 - K00924 vvi:100256117 546.199