Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0031 ATGCCGAAACTACCCTTATTATTTGCCACAACTCCATTCCCCACCCTGTTCTTCCTCCTCATCCTCTCCATATTTCAGGTAATTTCTCAAAATTTGGACGATGAACGATCAATCCTACTAGACGTTAAACAACAATTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTTGCCTTGTGATTGGCCGGAAATTACATGCACCGACAATACCGTCACTGCAATTTCACTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCGTACTTGACCTCTCCAACAATTACATTGTCGGTGAGTTCCCGGATATTCTCAATTGTTCCAAGCTTGAGTATCTGCTCTTGTTGCAAAACTCCTTCGTAGGTCCAATTCCAGCTGATATTGATCGACTTTCACATCTCCGGTACCTAGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGAGGCTACGGGAACTGTTCTACTTGTTTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATAGGTAATTTGGCGAATCTTGAACATTTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAAAAGCTGAAATATCTGTGGATGACGCAGGCGAATTTGATTGGCGAAATACCGAAGAGCTTCAACCATCTGTCGAGTCTAGAACACTTGGATCTCTCACTCAACAAATTAGAAGGTACGATCCCTGGAGGTTTTGGGAAGCTACAAAATTTGACCGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGTAAATATAAGCCTCATTCCTACACTAGAAACTTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCAGAGCTCAAACGTTTTGAGGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGTTTTGCTTGGAGTGGTTGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCTCTCGGGAATTGCAGAAGTTTGCTCACCATTCAGCTTTCCAACAATCGCTTTTCAGGTGAGATTCCTTCTGGCATCTGGACATCCCCGGACATGATATGGGTGATGTTAGCTGGAAATTCATTCTCGGGGACACTTCCAAGTAAATTGGCAAGGAATTTGTCTAGAGTGGAGATTAGTAACAACAAGTTTTCTGGTCCAATTCCTGCTGAAATCTCTTCTTGGATGAACATAGCTGTGCTCAATGCCAGCAACAATATGTTGTCAGGAAAAATTCCAATGGAATTAACCAGTCTTCGAAACATCTCTGTTTTGTTGCTTGATGGGAATCAATTCTCGGGTGAGCTTCCATCTGAGATCATCTCATGGAAGTCGCTCAATAATTTGAATCTCTCAAGAAACAAACTTTCTGGCCCAATTCCCAAGGCATTAGGTTCTTTACCTAACCTCAATTACCTTGACTTGTCAGAAAACCAGTTCTCGGGTCAAATTCCTCCTGAACTTGGTCATTTGACGCTTAATATCCTCGATCTATCATTCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAATATGGAGGATATGAACACAGTTTCTTGAATGATCCCAAGCTGTGTGTCAATGTTGGCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCTGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTCGTTGTATCTGGTTTCCTAGCTATTGTTTTGTTCACCCTGCTCATGATTCGAGATGATAATAGGAAGAATCACAGTCGAGACCATACACCTTGGAAGGTTACTCAATTCCAAACACTAGATTTCAATGAACAGTACATATTGACCAATTTGACAGAAAATAATTTGATCGGACGCGGTGGGTCAGGGGAAGTATACCGAATTGCTAATAACCGTTCTGGTGAACTCCTGGCGGTTAAAAAGATTTGTAATAACAGGAGATTGGATCACAAGTTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTGTTGCATATCGAATGAAAGCTCAAGCCTTCTTGTTTATGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACAACGTCCATGACAAGTTCAGTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCTATCGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGCGAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGGCCGACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAGAACCCAACAGCAGGGACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAATTCAAAGAAGAAAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAACAATGTGAAAGAGCACAAGTGACCACTCTCTTCAGTCTAGGCCTCATGTGCACTACCAGATCACCATCCACTAGGCCCACAATGAAGGAGGTTTTGGAAATTCTTCGACAGTGCAGTCCTCAGGAGGGCCATGGAAGAAAGAAAAAGGACCATGAAGCTGCACCCCTGCTTCAAAATGGCACTTACCCCGCTACTTACAAGCATAGCGAGAAGGAATCAGACAATGAGGATGACGATAACTTCATTTGA 2925 0.4373 MPKLPLLFATTPFPTLFFLLILSIFQVISQNLDDERSILLDVKQQLGNPPSLQSWNSSSLPCDWPEITCTDNTVTAISLHNKTIREKIPATICDLKNLIVLDLSNNYIVGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSHLRYLDLTANNFSGDIPAAIGRLRELFYLFLVQNEFNGTWPTEIGNLANLEHLAMAYNDKFRPSALPKEFGALKKLKYLWMTQANLIGEIPKSFNHLSSLEHLDLSLNKLEGTIPGGFGKLQNLTGLNLFWNQLSGEIPVNISLIPTLETFKVFSNQLSGVLPPAFGLHSELKRFEVSENKLSGELPQHLCARGVLLGVVASNNNLSGEVPKSLGNCRSLLTIQLSNNRFSGEIPSGIWTSPDMIWVMLAGNSFSGTLPSKLARNLSRVEISNNKFSGPIPAEISSWMNIAVLNASNNMLSGKIPMELTSLRNISVLLLDGNQFSGELPSEIISWKSLNNLNLSRNKLSGPIPKALGSLPNLNYLDLSENQFSGQIPPELGHLTLNILDLSFNQLSGMVPIEFQYGGYEHSFLNDPKLCVNVGTLKLPRCDAKVVDSDKLSTKYLVMILIFVVSGFLAIVLFTLLMIRDDNRKNHSRDHTPWKVTQFQTLDFNEQYILTNLTENNLIGRGGSGEVYRIANNRSGELLAVKKICNNRRLDHKFQKQFIAEVEILGTIRHSNIVKLLCCISNESSSLLVYEYMEKQSLDRWLHGKKQRTTSMTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEADTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNSRDEHMCLVEWAWDQFKEEKTIEEVMDEEIKEQCERAQVTTLFSLGLMCTTRSPSTRPTMKEVLEILRQCSPQEGHGRKKKDHEAAPLLQNGTYPATYKHSEKESDNEDDDNFI* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0031 974 FunFam Receptor-like protein kinase HSL1 624 723 - -
Vvi4g0031 974 ProSitePatterns Protein kinases ATP-binding region signature. 650 674 IPR017441 GO:0005524
Vvi4g0031 974 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Vvi4g0031 974 Gene3D Ribonuclease Inhibitor 286 576 IPR032675 -
Vvi4g0031 974 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 591 930 - -
Vvi4g0031 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Vvi4g0031 974 FunFam - 682 872 - -
Vvi4g0031 974 MobiDBLite consensus disorder prediction 931 974 - -
Vvi4g0031 974 Gene3D Ribonuclease Inhibitor 32 206 IPR032675 -
Vvi4g0031 974 SMART LRR_typ_2 95 118 IPR003591 -
Vvi4g0031 974 SMART LRR_typ_2 264 288 IPR003591 -
Vvi4g0031 974 SMART LRR_typ_2 502 526 IPR003591 -
Vvi4g0031 974 SMART LRR_typ_2 142 166 IPR003591 -
Vvi4g0031 974 SMART LRR_typ_2 454 478 IPR003591 -
Vvi4g0031 974 SMART LRR_typ_2 240 263 IPR003591 -
Vvi4g0031 974 Gene3D Transferase(Phosphotransferase) domain 1 724 952 - -
Vvi4g0031 974 FunFam Uncharacterized protein 208 286 - -
Vvi4g0031 974 Pfam Protein kinase domain 646 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0031 974 SUPERFAMILY Protein kinase-like (PK-like) 630 927 IPR011009 -
Vvi4g0031 974 MobiDBLite consensus disorder prediction 932 946 - -
Vvi4g0031 974 SMART serkin_6 644 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0031 974 Gene3D Phosphorylase Kinase; domain 1 626 723 - -
Vvi4g0031 974 Gene3D Ribonuclease Inhibitor 208 284 IPR032675 -
Vvi4g0031 974 FunFam Uncharacterized protein 287 576 - -
Vvi4g0031 974 Pfam Leucine rich repeat 234 277 IPR001611 GO:0005515
Vvi4g0031 974 FunFam Receptor-like protein kinase HSL1 32 186 - -
Vvi4g0031 974 ProSiteProfiles Leucine-rich repeat profile. 97 119 IPR001611 GO:0005515
Vvi4g0031 974 SUPERFAMILY RNI-like 60 382 - -
Vvi4g0031 974 SUPERFAMILY L domain-like 329 546 - -
Vvi4g0031 974 ProSiteProfiles Protein kinase domain profile. 644 946 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0031 Vvi-Chr4 366545 369703 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0031 34 964 Receptor kinase-like Gene Family AT5G25930 52.792 0.0 968
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0031 Pkinase 3.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0031 K00924 - vvi:100250973 1651.34