Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0030 ATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACACCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGCGAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGCCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAAAACCCAACAGCGGGGACGAGCACATGTGCCTTGTAGAATGGGTATGGGATCAGTTCAGAGAAGGGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAACAATGTGAAAGAACACAAGTGACCACTCTCTTTAGTCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAAGAGGTTTTGGAAATTCTTCGACAGTGTAGTCCTCAGGAGGGCCTGCATGAGTATACAAGAAAGGTCAATGCAAAGATCAATGCCTACAATCTTGAAATTGCACTTCTAGAGTTGGGCCCTAAAAGAAAACCCAATAGGGGGAAGGGGCAGCATTTAAACCTTGTAATTTCCCAAAATTTGGACGATGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGCGGGAAATTACATGCACCGACAATACCGTCACTGCAATTTCACTCCACAATAAGACCATCAGAGAGAAAATTCCAGCCACAATTTGTGACCTCAAGAACCTCATCGTACTTGACCTTTCCAACAATTACATTCCCGGCGAGTTCTCGGATATTCTCAATTGTTCCAAGCTTGAGTATCTGCTCTTGTTGCAAAACTCCTTCGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTAGACCTCACAACAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGAGGCTACGGGAGCTGTTCTACTTGCTTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATTGGTAATTTGGCGAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAGAAGTTGAAATATCTGTGGATGACGCAGGCGAATTTGATTGGCGAAATACCGGAGAGCTTCAACCATCTGTCGAGTCTGGAACACTTGGATCTCTCACTCAACAAATTAGAAGGTACGATCCCTGGAGTCATGCTTACGTTGAAGAATTTGACCAATTTCAATCAATTGAGTGGAGTTTTGCCTCCAGCATTTGGCCTTCATTCGGAGCTCAAACGCTTTGAGGTTTCCAAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTTGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCACAAGTTTGCTCACCATTCAGCTTTCCAACAATCGCTTTTCAGGTGAGATTCCTTCCGACATCTGGACATCCCCGGACATGATATGGGTGATGTTAGCTGGAAATTCATTCTCGGGGACACTTCCAAGTAAATTGGCAAGGAATTTGTCCAGAGTGGAGATCAGTAACAACAAGTTTTCTGGTCCAATTCCTGCTGAAATCTCTTCTTGGATGAACATAGCTGTGCTCAATGCCCGCAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCAGTCTTCGGAACATCTCTGTTATGTTGCTTGATGGGAATCAATTCTCGGGTGAGCTTCCATCCGAGATCATCTCATGGAAGTCGCTCAATAATTTGAATCTCTCAAGAAACAAACTTTCTGGCCCAATTCCCAAGGCATTAGGTTCTTTACCTAACCTTAATTACCTTGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTGAACTTGGTCATTTGACGCTTAATATCCTCGATCTATCGTTCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAATATGGAGGATATGAACACAGTTTCTTGAACGATCCCAAGCTGTGTGTCAATGTTGGCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCATTATGATCCTAATTTTTCTTCAGAAACAATTCATAGCAGAAGTCGAGATATTGGGCACCATACGCCATTCCAATATAGTGAAGTTGTTGTGCTGCATATCGAATGAAAGCTCAAGCCTTCTTGTTTATGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACAACGTCCATGACAAGTTCAGTCCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCTATCGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAAAGCAAAAATTGCGGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGCCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAAAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAGAACCCAACAACGGGGACGAGCTCATGTGCCTTGTAGAATGGGCATGGGATCAGTTCAGAGAAGGGAAAACCATTGAGGAAGTGATGGATGAGGATATCAAGGAACAATGTGAAAGAGCACAAGTGACCACTCTCTTCAGTCTAGGCCTCATGTGCACCACCAGATCACCAGCCACTAGGCCCACAATGAAGGAAGTTTTGGAAATTCTTCGACAATGCAGTCCTCAGGAGGGCCATGGAAGAAAGAAAAAGGACCATGAAGTTGCACCCTTACTTCAAAATGGCACTTGCCCCGCTACTTACAAGCATAACGAGAAGGGATCAGACAATGAGGATGACGATAAATTAGTTTGA 3192 0.4521 MTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGRKPNSGDEHMCLVEWVWDQFREGKTIEEVMDEEIKEQCERTQVTTLFSLGLMCTTTLPSTRPTMKEVLEILRQCSPQEGLHEYTRKVNAKINAYNLEIALLELGPKRKPNRGKGQHLNLVISQNLDDERSILLDVKQQLGNPPSLQSWNSSSSPCDWREITCTDNTVTAISLHNKTIREKIPATICDLKNLIVLDLSNNYIPGEFSDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTTNNFSGDIPAAIGRLRELFYLLLVQNEFNGTWPTEIGNLANLEQLAMAYNDKFRPSALPKEFGALKKLKYLWMTQANLIGEIPESFNHLSSLEHLDLSLNKLEGTIPGVMLTLKNLTNFNQLSGVLPPAFGLHSELKRFEVSKNKLSGELPQHLCARGALLGVVASNNNLSGEVPKSLGNCTSLLTIQLSNNRFSGEIPSDIWTSPDMIWVMLAGNSFSGTLPSKLARNLSRVEISNNKFSGPIPAEISSWMNIAVLNARNNMLSGKIPVELTSLRNISVMLLDGNQFSGELPSEIISWKSLNNLNLSRNKLSGPIPKALGSLPNLNYLDLSENQFSGQIPPELGHLTLNILDLSFNQLSGMVPIEFQYGGYEHSFLNDPKLCVNVGTLKLPRCDAKVVDSDKLSTKYLIMILIFLQKQFIAEVEILGTIRHSNIVKLLCCISNESSSLLVYEYMEKQSLDRWLHGKKQRTTSMTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFKAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNNGDELMCLVEWAWDQFREGKTIEEVMDEDIKEQCERAQVTTLFSLGLMCTTRSPATRPTMKEVLEILRQCSPQEGHGRKKKDHEVAPLLQNGTCPATYKHNEKGSDNEDDDKLV* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0030 1063 Gene3D Ribonuclease Inhibitor 415 476 IPR032675 -
Vvi4g0030 1063 Gene3D Transferase(Phosphotransferase) domain 1 3 212 - -
Vvi4g0030 1063 Gene3D Transferase(Phosphotransferase) domain 1 814 1041 - -
Vvi4g0030 1063 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 753 1017 - -
Vvi4g0030 1063 SMART serkin_6 734 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0030 1063 Pfam Leucine rich repeat N-terminal domain 240 276 IPR013210 -
Vvi4g0030 1063 Gene3D Ribonuclease Inhibitor 477 755 IPR032675 -
Vvi4g0030 1063 FunFam Kinase family with leucine-rich repeat domain-containing protein 1 196 - -
Vvi4g0030 1063 SUPERFAMILY L domain-like 416 722 - -
Vvi4g0030 1063 SUPERFAMILY Protein kinase-like (PK-like) 775 1016 IPR011009 -
Vvi4g0030 1063 FunFam Receptor-like protein kinase HSL1 239 393 - -
Vvi4g0030 1063 ProSiteProfiles Protein kinase domain profile. 1 198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0030 1063 ProSiteProfiles Protein kinase domain profile. 719 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0030 1063 Pfam Protein kinase domain 19 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0030 1063 Pfam Protein kinase domain 776 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0030 1063 MobiDBLite consensus disorder prediction 1022 1063 - -
Vvi4g0030 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Vvi4g0030 1063 SMART LRR_typ_2 349 373 IPR003591 -
Vvi4g0030 1063 SMART LRR_typ_2 681 705 IPR003591 -
Vvi4g0030 1063 SMART LRR_typ_2 447 471 IPR003591 -
Vvi4g0030 1063 SMART LRR_typ_2 302 321 IPR003591 -
Vvi4g0030 1063 Gene3D Ribonuclease Inhibitor 239 414 IPR032675 -
Vvi4g0030 1063 SUPERFAMILY Protein kinase-like (PK-like) 9 185 IPR011009 -
Vvi4g0030 1063 Gene3D Phosphorylase Kinase; domain 1 756 813 - -
Vvi4g0030 1063 SUPERFAMILY L domain-like 262 478 - -
Vvi4g0030 1063 FunFam Kinase family with leucine-rich repeat domain-containing protein 813 1033 - -
Vvi4g0030 1063 FunFam Uncharacterized protein 466 755 - -
Vvi4g0030 1063 ProSitePatterns Serine/Threonine protein kinases active-site signature. 868 880 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0030 Vvi-Chr4 324794 351171 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0030 10 234 Receptor kinase-like Gene Family AT5G25930 60.177 2.41e-75 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0030 Pkinase 7.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0030 - K00924 vvi:100256117 644.039