Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0029 ATGGAGATTGGTAATTTGGCGAATCTTGAACAATTGGCCATGGCCTATAATGAAAAATTCCAGCCTTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAGAAGCTGAAATATTTGTGGATGACGGAGGCGAATTTGATTGGCGAAATACCGGAGAGCTTCAACAATCTATCGAATCTGGAACTCTTGGACCTCTCAGTCAACAAATTGGAAGGTACGATCCCGGGAGGCATAGTGGAGATCGCTAACAACAAGTTTTATGGTCCAATTCCTGCTGAAATCTCTTCCTGGATGAACATCTCTGTGCTCAATGCCAACAACAATATGTTGTCTGGAAAAATTCCAGTGGAATTGACTAGTCTTTGGAACATCACTGTTCTGTTGCTTGATGAGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCGCTCAATAAGTTAAATCTCTCAAGAAACAAACTTTCTGGCCTAATTCCCAAGGCATTAGGTTCTTTAACTAGCCTTAGTTACCTCGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTAAACTTGGCCATTTGAACCTTATTATCCTCCATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAACATGAAGCATATGAAGACAGTTTCTTGAACAATCCCAAGTTGTGTGTCAATGTTCCCACTTTGAACCTCCCTAGATGTGATGCCAAACCCGTCAACTCCGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTCGCTCTAGCTGATCTCGATGAATACAACATATTGTCCAGTTTGACAGAAAATAATCTGATCGTATGTGGTGGGTCAGGGAAAGTATACCGAGTTGCTAATAACCGTTCTGGTGAACTCTTAGCGGTTAAAATGATTTGTAATAACAGGAGATTGGATCAAAAGCTTCAGAAACAATTCGAAACAGAAGTCGAGATATTGAGCACCATGCGCCATGCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCTCTAGTCTTCTTGTTTACGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATCGTCCATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGAGCTGCAAAAGGCCTATGCCACATGCATGAATACTGTTCTGTCCCAATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGCGAAAATTGCGGATTTTGGATTGGCTGAGACGTTGGTCAAGCAAGGAGAACCCAACACCATGTCAAGAATTGCAGGCTCTTACGGGTATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACAAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTTGTGACAGGTAGAGAACCCAACAATGGGGACGAGCACATGTGCCTTGCGGAATGA 1503 0.4278 MEIGNLANLEQLAMAYNEKFQPSALPKEFGALKKLKYLWMTEANLIGEIPESFNNLSNLELLDLSVNKLEGTIPGGIVEIANNKFYGPIPAEISSWMNISVLNANNNMLSGKIPVELTSLWNITVLLLDENQFSGELPSQIISWKSLNKLNLSRNKLSGLIPKALGSLTSLSYLDLSENQFSGQIPPKLGHLNLIILHLSSNQLSGMVPIEFQHEAYEDSFLNNPKLCVNVPTLNLPRCDAKPVNSDKLSTKYLVMILIFALADLDEYNILSSLTENNLIVCGGSGKVYRVANNRSGELLAVKMICNNRRLDQKLQKQFETEVEILSTMRHANIVKLLCCISNETSSLLVYEYMEKQSLDRWLHGKKQRTSSMTSSVHNFVLDWPTRLQIAIGAAKGLCHMHEYCSVPIIHRDVKSSNILLDAEFNAKIADFGLAETLVKQGEPNTMSRIAGSYGYIAPEYAYTTKVNKKIDVYSFGVVLLELVTGREPNNGDEHMCLAE* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0029 500 FunFam Receptor-like protein kinase HSL1 101 233 - -
Vvi4g0029 500 PRINTS Leucine-rich repeat signature 168 181 - -
Vvi4g0029 500 PRINTS Leucine-rich repeat signature 147 160 - -
Vvi4g0029 500 SUPERFAMILY L domain-like 4 214 - -
Vvi4g0029 500 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Vvi4g0029 500 FunFam Receptor-like protein kinase HSL1 255 353 - -
Vvi4g0029 500 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 2 77 - -
Vvi4g0029 500 Gene3D Ribonuclease Inhibitor 1 242 IPR032675 -
Vvi4g0029 500 Gene3D Transferase(Phosphotransferase) domain 1 263 499 - -
Vvi4g0029 500 ProSiteProfiles Protein kinase domain profile. 274 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0029 500 SMART LRR_typ_2 193 214 IPR003591 -
Vvi4g0029 500 SMART LRR_typ_2 56 80 IPR003591 -
Vvi4g0029 500 SMART LRR_typ_2 144 167 IPR003591 -
Vvi4g0029 500 SMART LRR_typ_2 168 192 IPR003591 -
Vvi4g0029 500 SUPERFAMILY Protein kinase-like (PK-like) 256 496 IPR011009 -
Vvi4g0029 500 Pfam Protein kinase domain 282 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0029 500 FunFam - 312 500 - -
Vvi4g0029 500 SMART serkin_6 274 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0029 500 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 82 - -
Vvi4g0029 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 409 421 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0029 Vvi-Chr4 321962 324242 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0029 2 500 Receptor kinase-like Gene Family AT5G25930 48.763 3.65e-161 481
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0029 Pkinase 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0029 K00924 - vvi:100244081 783.097