Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0028 ATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAAGAGTTTGGCGCATTGAAGAAGCTGAAATATCTGTGGATGACGGAGGCGAATTTGATTGGCGAAATACCGGAGAGCTTCAACAATCTATCGAGTCTGGAACTCTTGGACCTCTCAGTCAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACGTTGAAGAATTTGAACTATTTGCATTTATTCATTAATAGATTGTCCGGCTACATTCCTTCATCCATAGAAGCTCTCAACTTGAAACAAATTGATCTTTCCGACAACCATTTGACGGGGTCCATACCAGCGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTGGAAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCCCCAGCATTTGGCCTTCATTCGGAGCTCAAATTCTTTGAGATTTTTGAGAATAAACTAAGTGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGGAATTGCACAAGTTTGCTCACCATTCAGCTTTCCAACAATCGTTTTTCAGGCGGGATTCCTTCCGGCATCTGGACATCCCCGAACATGGTATCGGTGATGTTAGATGGAAATTCATTCTCAGGGACACTTCCAAGTAAATTGGCAAGGAATTTGTCTAGAGTGGAGATCGCTAACAACAAGTTTTATGGTCCAATTCCTGCTGAAATCTCTTCCTGGGTGAACATCTCTGTGCTCAATGCCAGCAACAATATGTTGTCTGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCACTGTTCTGTTGCTTGATGGGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCTTTCAATAAGTTAAATCTCTCAAGAAACAAACTTTCTGGCCTAATTCCCAAGGCATTAGGTTCTTTAACCAGCCTTAGTTACCTCGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTGAACTTGGCCATTTGAACCTTATTATCCTCCATCTTTCGTCCAACCAACTCTCTGGGATGGTCCCCATTGAGTTTCAACATGAAGCATATGAAGACAGTTTCTTGAACAATCCCAAGTTGTGTGTCAATGTTCCCACTCTGAACCTCCCTAGATGTGATGCCAAACCCGTCAACTCCGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTCGCTCTAGCTGGTGCTTTCGTCACCCTGTCCAGGGTTCATATCTATCATAGGAAGAATCACAGTCAGGACCATACAGCTTGGAAATTTACTCCATACCATAAACTAGATCTCGATGAATACAACATATTGTCCAGTTTGATAGAAAATAATCTGATCGGATGTGGTGGGTCAGGGAAAGTATACCGAATTGCTAATAACCGTTCTGGTGAACTCTTAGCGGTTAAAATGATTTCTAATAACAAGAGATTGGATCAAAAGCTTCAGAAAAAATTCAAAACAGAAGTCGAGATATTGAGCACCATACGCCATGCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCTCAAGTCTTCTTGTTTACGAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATAGGAAGAAGCAGAGAACATCGTCCATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACACCGAGATGTGAAGTCCAACAACATCTTGCTAGATGCTGAGTTCAACGCGAAAATTGCGGATTTTGGATTAGCCAAGATGTTGGTCAAGCAAGGAGAGCCCGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACGAGAAGATCGATGTATATAGCTTTGGAGTAGTCCTGCTTGAGCTAGTGACGGGGAGAGAACCCAACAGCGGGGACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTCAAAGAAGGGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAACAATGTGAAAGAGCACAAGTGACCACTCTCTTCAGTCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAAGAGGTTTTGGAAATTCTTCGACAATGCAGTCCTTAG 2337 0.4356 MAYNDKFRPSALPKEFGALKKLKYLWMTEANLIGEIPESFNNLSSLELLDLSVNKLEGTIPGGMLTLKNLNYLHLFINRLSGYIPSSIEALNLKQIDLSDNHLTGSIPAGFGKLQNLTGLNLFWNQLSGEIPANISLIPTLETFKVFSNQLSGVLPPAFGLHSELKFFEIFENKLSGELPQHLCARGALLGVVASNNNLSGEVPTSLGNCTSLLTIQLSNNRFSGGIPSGIWTSPNMVSVMLDGNSFSGTLPSKLARNLSRVEIANNKFYGPIPAEISSWVNISVLNASNNMLSGKIPVELTSLWNITVLLLDGNQFSGELPSQIISWKSFNKLNLSRNKLSGLIPKALGSLTSLSYLDLSENQFSGQIPPELGHLNLIILHLSSNQLSGMVPIEFQHEAYEDSFLNNPKLCVNVPTLNLPRCDAKPVNSDKLSTKYLVMILIFALAGAFVTLSRVHIYHRKNHSQDHTAWKFTPYHKLDLDEYNILSSLIENNLIGCGGSGKVYRIANNRSGELLAVKMISNNKRLDQKLQKKFKTEVEILSTIRHANIVKLLCCISNETSSLLVYEYMEKQSLDRWLHRKKQRTSSMTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSNNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNSGDEHMCLVEWAWDQFKEGKTIEEVMDEEIKEQCERAQVTTLFSLGLMCTTTLPSTRPTMKEVLEILRQCSP* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0028 778 FunFam Kinase family with leucine-rich repeat domain-containing protein 570 778 - -
Vvi4g0028 778 Gene3D Transferase(Phosphotransferase) domain 1 571 778 - -
Vvi4g0028 778 SUPERFAMILY L domain-like 195 397 - -
Vvi4g0028 778 SMART LRR_typ_2 377 398 IPR003591 -
Vvi4g0028 778 SMART LRR_typ_2 352 376 IPR003591 -
Vvi4g0028 778 SMART LRR_typ_2 43 67 IPR003591 -
Vvi4g0028 778 SMART LRR_typ_2 114 138 IPR003591 -
Vvi4g0028 778 FunFam Predicted protein 91 186 - -
Vvi4g0028 778 ProSiteProfiles Protein kinase domain profile. 490 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0028 778 FunFam Leucine-rich receptor-like protein kinase family protein 187 425 - -
Vvi4g0028 778 SMART serkin_6 490 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0028 778 Pfam Leucine rich repeat 328 365 IPR001611 GO:0005515
Vvi4g0028 778 Pfam Protein kinase domain 493 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0028 778 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 10 137 - -
Vvi4g0028 778 FunFam Receptor-like protein kinase HSL1 470 569 - -
Vvi4g0028 778 ProSitePatterns Protein kinases ATP-binding region signature. 496 519 IPR017441 GO:0005524
Vvi4g0028 778 Gene3D Phosphorylase Kinase; domain 1 456 570 - -
Vvi4g0028 778 Gene3D Ribonuclease Inhibitor 187 297 IPR032675 -
Vvi4g0028 778 Gene3D Ribonuclease Inhibitor 3 90 IPR032675 -
Vvi4g0028 778 Gene3D Ribonuclease Inhibitor 298 420 IPR032675 -
Vvi4g0028 778 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vvi4g0028 778 Gene3D Ribonuclease Inhibitor 91 186 IPR032675 -
Vvi4g0028 778 SUPERFAMILY L domain-like 10 255 - -
Vvi4g0028 778 FunFam Uncharacterized protein 3 90 - -
Vvi4g0028 778 SUPERFAMILY Protein kinase-like (PK-like) 472 773 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0028 Vvi-Chr4 313464 315893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0028 1 775 Receptor kinase-like Gene Family AT5G25930 56.210 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0028 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0028 K00924 - vvi:100266420 1549.26