Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0026 ATGGATCAAGATGCTGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGCCGGAAATTACATGCATCGACAATATCGTCACTGAAATTTCACTCAGCTACAAGACCATCACAAAGAAAATTCCGGCCAGAATTTGTGACCTCAAGAACCTAATCGTACTTGACGTCTCCTACAATTACATTCCAGGCGAGTTCCCGGATATTCTCAATTGCTCTAAGCTCGAATATCTCCTCTTGTTGCAAAACTCCTTCGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGATACCTAGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGTAGCAATTGGGCGGCTACGGGAGCTGTTCTACTTGTTTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATTGGTAATTTGTCAAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGAAGTATCTGTGGATGACGAAGGCAAATTTGATGGGCGAAATACCGGAGAGCTTCAACAATCTATCGAGTCTGGAACTCTTGGACCTCTCAAACAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACATTGAAGAATTTGAACTATTTTCTTTTATTCATTAATAGATTGTCCGGCCACATTCCTTCATCCATAGAAGCTCTCAACTTGAAAGAAATTGATCTTTCCGACAACCATTTGACGGGGTCCATACCAGCGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTTGAAACTTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTACCTCCAGCATTTGGCCTTCATTCGGAGCTCAAACTCTTTGAGGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGACTTTGCTTGGAGTGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGGAATTGCACAAGTTTGCTCACCATTCAACTTTCCAACAATCGTTTTTCAGGCGGGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATCGGTGATGTTAGATGGAAATTCATTCTCAGGGACACTTCCAAGTAAATTGGCAAGGAATTTGTCTAGAGTGGAGATCGCTAACAACAAGTTTTATGGTCCAATTCCTGCTGAAATCTCTTCCTGGATGAACATCTCTGTGCTCAATGCCAGCAACAATATGTTGTCTGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCACTGTTCTGTTGCTTGATGGGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCGCTCAATAAGTTAAATCTCTCAAGAAACAAACTTTCTGGCCTAATTCCCAAGGCATTAGGTTCTTTAACTAGCCTTAGTTACCTCGACCTGTCAGAAAACCAGTTCTCAGGTCAAATTCCTCCTGAACTTGGCCATTTGAACCTTATTATCCTCCATCTTTCGTCCAACCAACTGTCTGGGATGGTCCCCATTGAGTTTCAACATGAAGCATATGAAGACAGTTTCTTGAACAATCCCAAGTTGTGTGTCAATGTTCCCACTTTGAACCTCCCTAGATGTGATGCCAAACCCGTCAACTCCGACAAATTGTCAACCAAATATCTCGTTTTCGCTCTATCTGGTTTCCTAGCTGTTGTTTTCGTCACCCTGTCCATGGTTCATGTCTATCATAGGAAGAATCACAATCAGGAGCATACAGCTTGGAAATTTACTCCATACCATAAACTAGATCTCGATGAATACAACATATTGTCCAGTTTGACAGAAAATAATCTGATCGGATGTGGTGGGTCAGGGAAAGTATACCGAGTTGCTAATAACCGTTCTGGTGAACTCTTAGCGGTTAAAATGATTTGTAATAATAGGAGATTGGATCAAAAGCTTCAGAAACAATTCGAAACAGAAGTCAAGATATTGAGCACCATACGCCATGCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCTCAAGTCTTCTTGTTTACGAGTACATGCAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATCGTCCATGACAAGTTCAGTTCATAACTTTGTCTTGGATTGGCCAACAAGGTTGCAGATTGCTATCGGAGCTGCAAAAGGCCTATGCCACATGCATGAAAACTGCTCTGCCCCGATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAACGCGAAAATTGCAGATTTTGGATTGGCCAAGATGTTGGTCAAGCAAGGAGAGCCAGACACCATGTCAGGAATTGCAGGCTCTTACGGATATATTGCCCCTGAGTATGCTTATACAACAAAGGTGAACAAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTTGTGACGGGGAGAGAACCCAACAATGGGGACGAGCACGTGTGCCTTGCAGAATGGGCATGGGATCAGTTCAGAGAAGAGAAAACCATTGAGGAAGTGATGGATGAGGAGATCAAGGAAGAATGTGATAGAGCACAAGTGGCCACTCTCTTCAAACTAGGCATTAGGTGCACTAACAAATTACCATCCAATAGGCCCACAATGAAAGGGGTTTTGAAAATTCTTCAACAGTGCAGTCCTCAAGAGGGCCATGGAAGAAATAAAAAGGACCATGAAGTTGCACCTCCACTTCGAAATGACACTTACCCCACCACTTACAAGTTGTGA 2925 0.4376 MDQDAERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEITCIDNIVTEISLSYKTITKKIPARICDLKNLIVLDVSYNYIPGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTANNFSGDIPVAIGRLRELFYLFLVQNEFNGTWPTEIGNLSNLEQLAMAYNDKFRPSALPKEFGALKKLKYLWMTKANLMGEIPESFNNLSSLELLDLSNNKLEGTIPGGMLTLKNLNYFLLFINRLSGHIPSSIEALNLKEIDLSDNHLTGSIPAGFGKLQNLTGLNLFWNQLSGEIPANISLIPTLETFKVFSNQLSGVLPPAFGLHSELKLFEVSENKLSGELPQHLCARGTLLGVVASNNNLSGEVPTSLGNCTSLLTIQLSNNRFSGGIPSGIWTSPDMVSVMLDGNSFSGTLPSKLARNLSRVEIANNKFYGPIPAEISSWMNISVLNASNNMLSGKIPVELTSLWNITVLLLDGNQFSGELPSQIISWKSLNKLNLSRNKLSGLIPKALGSLTSLSYLDLSENQFSGQIPPELGHLNLIILHLSSNQLSGMVPIEFQHEAYEDSFLNNPKLCVNVPTLNLPRCDAKPVNSDKLSTKYLVFALSGFLAVVFVTLSMVHVYHRKNHNQEHTAWKFTPYHKLDLDEYNILSSLTENNLIGCGGSGKVYRVANNRSGELLAVKMICNNRRLDQKLQKQFETEVKILSTIRHANIVKLLCCISNETSSLLVYEYMQKQSLDRWLHGKKQRTSSMTSSVHNFVLDWPTRLQIAIGAAKGLCHMHENCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGIAGSYGYIAPEYAYTTKVNKKIDVYSFGVVLLELVTGREPNNGDEHVCLAEWAWDQFREEKTIEEVMDEEIKEECDRAQVATLFKLGIRCTNKLPSNRPTMKGVLKILQQCSPQEGHGRNKKDHEVAPPLRNDTYPTTYKL* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0026 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Vvi4g0026 974 SUPERFAMILY Protein kinase-like (PK-like) 641 942 IPR011009 -
Vvi4g0026 974 Pfam Leucine rich repeat N-terminal domain 4 40 IPR013210 -
Vvi4g0026 974 FunFam Uncharacterized protein 171 258 - -
Vvi4g0026 974 Pfam Protein kinase domain 660 939 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0026 974 SUPERFAMILY L domain-like 341 565 - -
Vvi4g0026 974 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 935 - -
Vvi4g0026 974 ProSitePatterns Protein kinases ATP-binding region signature. 664 687 IPR017441 GO:0005524
Vvi4g0026 974 SUPERFAMILY RNI-like 47 392 - -
Vvi4g0026 974 Gene3D Ribonuclease Inhibitor 256 353 IPR032675 -
Vvi4g0026 974 ProSiteProfiles Protein kinase domain profile. 658 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0026 974 PRINTS Leucine-rich repeat signature 520 533 - -
Vvi4g0026 974 PRINTS Leucine-rich repeat signature 214 227 - -
Vvi4g0026 974 Gene3D Ribonuclease Inhibitor 465 588 IPR032675 -
Vvi4g0026 974 MobiDBLite consensus disorder prediction 947 974 - -
Vvi4g0026 974 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515
Vvi4g0026 974 FunFam Uncharacterized protein 304 594 - -
Vvi4g0026 974 Gene3D Ribonuclease Inhibitor 179 255 IPR032675 -
Vvi4g0026 974 Gene3D Ribonuclease Inhibitor 354 464 IPR032675 -
Vvi4g0026 974 SMART serkin_6 658 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0026 974 SMART LRR_typ_2 545 566 IPR003591 -
Vvi4g0026 974 SMART LRR_typ_2 113 137 IPR003591 -
Vvi4g0026 974 SMART LRR_typ_2 211 235 IPR003591 -
Vvi4g0026 974 SMART LRR_typ_2 496 519 IPR003591 -
Vvi4g0026 974 SMART LRR_typ_2 520 544 IPR003591 -
Vvi4g0026 974 SMART LRR_typ_2 282 306 IPR003591 -
Vvi4g0026 974 Pfam Leucine rich repeat 495 533 IPR001611 GO:0005515
Vvi4g0026 974 Gene3D Phosphorylase Kinase; domain 1 624 738 - -
Vvi4g0026 974 FunFam Kinase family with leucine-rich repeat domain-containing protein 738 958 - -
Vvi4g0026 974 Gene3D Ribonuclease Inhibitor 3 177 IPR032675 -
Vvi4g0026 974 FunFam Receptor-like protein kinase HSL1 3 157 - -
Vvi4g0026 974 FunFam Receptor-like protein kinase HSL1 638 737 - -
Vvi4g0026 974 Gene3D Transferase(Phosphotransferase) domain 1 739 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0026 Vvi-Chr4 295143 300469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0026 3 943 Receptor kinase-like Gene Family AT5G25930 55.111 0.0 1014
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0026 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0026 K00924 - vvi:100244081 1909.42