Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0025 ATGATTTGTAATAACAGGAGATTGGATCAAAAGCTTCAGAAACAATTCGAAACAGAAGTCAAGATATTGAGCACCATACGCCATGCCAATATAGTGAAGTTGTTGTGTTGCATATCAAATGAAACCTCAAGTCTTCTTGTTTACAAGTACATGGAGAAGCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAAAGAACATCGTCCATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATTGGACCTGCAAAAGGCCTATGCCACATGCATGAATACTGTTCTGTCCCAATCATACATCGAGATGTGAAGTCCAGCAACATCTTGCTAGATGCCGAGTTCAAAGCGAAAATTGTGGATTTTGGATTGGCTAAGACGTTGGTCAAGCAAGGAGAACCCAACACCATGTCAGGAATTGTAGGCTCTTACAGGTATATTGCCCCTGGTAAGACCATCAAGGCCCTCCTTTCCACATGTTTTCATTTCCATAATTTATCGATAATTTGTATCATACCATTCTCGTATACTTGGATCATAGAGTATGCTTATACAACAAAGGTGAACAAGAAGATCGATGTATATAGCTTTGGAGTAGTCTTGCTTGAGCTTGTGACGGGAAGAGAACCCAACAATGGGGACGAGCACATGTGCCTTGCAGAATGGGCATTGGATCAGTTTAGAGAAAGGAAAACCATTGAGGAAGTGGTAGACGAGGAGATCAAGGAACAATGTGATAGAGCACAAGTGGCCACTCTCTTCAAACTAGGCATTAGGTGCACTAACAAATTACCATCCAATAGGTCCACAATGAAAGAGGTTTTGAAAATTCTTCAACAGTGCAGTCCTCAAGAGGGCCATGGAAGAAATAAAAAGGACCATGAAGTTGCACCTCCACTTCAAAATGGCACTTATCCCACCACTTACAAGTTGTGA 957 0.418 MICNNRRLDQKLQKQFETEVKILSTIRHANIVKLLCCISNETSSLLVYKYMEKQSLDRWLHGKKQRTSSMTSSVHNFVLDWPTRLQIAIGPAKGLCHMHEYCSVPIIHRDVKSSNILLDAEFKAKIVDFGLAKTLVKQGEPNTMSGIVGSYRYIAPGKTIKALLSTCFHFHNLSIICIIPFSYTWIIEYAYTTKVNKKIDVYSFGVVLLELVTGREPNNGDEHMCLAEWALDQFRERKTIEEVVDEEIKEQCDRAQVATLFKLGIRCTNKLPSNRSTMKEVLKILQQCSPQEGHGRNKKDHEVAPPLQNGTYPTTYKL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0025 318 Gene3D Phosphorylase Kinase; domain 1 3 51 - -
Vvi4g0025 318 PANTHER OS01G0750732 PROTEIN 9 292 - -
Vvi4g0025 318 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
Vvi4g0025 318 Gene3D Transferase(Phosphotransferase) domain 1 52 308 - -
Vvi4g0025 318 Pfam Protein tyrosine and serine/threonine kinase 187 284 IPR001245 GO:0004672|GO:0006468
Vvi4g0025 318 PIRSF ILK 179 302 - -
Vvi4g0025 318 PIRSF ILK 2 163 - -
Vvi4g0025 318 Pfam Protein kinase domain 6 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0025 318 ProSiteProfiles Protein kinase domain profile. 1 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0025 318 SMART serkin_6 1 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0025 318 SUPERFAMILY Protein kinase-like (PK-like) 7 286 IPR011009 -
Vvi4g0025 318 MobiDBLite consensus disorder prediction 290 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0025 Vvi-Chr4 279967 280923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0025 2 287 Receptor kinase-like Gene Family AT5G25930 55.401 3.80e-98 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0025 Pkinase 1.1e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0025 - K00924 vvi:100244081 529.635