Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0023 ATGAGGACCATGGAAGAAAGAAAAAGGACCATGAAGCTGCACCTGAACATACATCGAGATGTAAAGTCCAGCAACATCTTACTAGACGCTGAGTTCAACGCGAAAATTGTAGATTTTGGATTACCCAAGATGTTGGTCAAGCAAGGAGAGCCCGATACCATGTCAGGAGTTGCAGGCTCTTACAGATATATTGCCCCCGAGTATGCTTATACACCAAAGGTGAAGGAGAAGACCGATGTATATAGCTTTGGAGTAGTTCTTCTTGAGCTGGTGACGGGGAGAGAACCTAACAGCGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTTAGAGAAGGGAAAACCATTGAGGAAGTGGTGGATGAGGAGATCAAAGAACAATGTGACAGAGCACAAGTGACCACTTTCTTCAATCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAGGAGGTTTTGGAAATTCTTCGACTGTGCAGTCCTCAGGAGGACCATGGAAGAAAGAAAAAAGACCATGAAGCTGCACCCCTGCTTCTAAATGGCACTTAA 567 0.455 MRTMEERKRTMKLHLNIHRDVKSSNILLDAEFNAKIVDFGLPKMLVKQGEPDTMSGVAGSYRYIAPEYAYTPKVKEKTDVYSFGVVLLELVTGREPNSEHMCLVEWAWDQFREGKTIEEVVDEEIKEQCDRAQVTTFFNLGLMCTTTLPSTRPTMKEVLEILRLCSPQEDHGRKKKDHEAAPLLLNGT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0023 188 SUPERFAMILY Protein kinase-like (PK-like) 17 164 IPR011009 -
Vvi4g0023 188 Pfam Protein kinase domain 17 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0023 188 SMART serkin_6 2 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0023 188 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0023 188 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 17 163 - -
Vvi4g0023 188 Gene3D Transferase(Phosphotransferase) domain 1 10 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0023 Vvi-Chr4 241463 242123 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0023 17 186 Receptor kinase-like Gene Family AT5G25930 63.429 7.41e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0023 Pkinase 3.8e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0023 - K00924 vvi:109122498 384.415