Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0022 ATGAAGCTGCACCCGATCATACATCGAGATGTAAAGTCCAGCAACAACTTACTAGACGCTGAGTTCAGCGCGAAAATGGTAGATTTTGGATTAGCCAAGATGTTGGTCAAGAAAGGAGAGCCTGACACCATGTCAGGAGTTGAAGGCTCTTACGGATATATTGCCCCCGAGTATGCTTATACAACAAAGGTGAACAATAAGATCGATGTATATAGCTTTGGAGTAGTTCTGCTTGAGCTGGTGACGAGGAGAGAACCTAATAGCGAGCACATGTGCCTTGTAGAATGGGCATGA 294 0.449 MKLHPIIHRDVKSSNNLLDAEFSAKMVDFGLAKMLVKKGEPDTMSGVEGSYGYIAPEYAYTTKVNNKIDVYSFGVVLLELVTRREPNSEHMCLVEWA* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0022 97 Gene3D Transferase(Phosphotransferase) domain 1 1 97 - -
Vvi4g0022 97 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0022 97 SUPERFAMILY Protein kinase-like (PK-like) 4 88 IPR011009 -
Vvi4g0022 97 PANTHER OS08G0249100 PROTEIN 4 97 IPR046958 -
Vvi4g0022 97 Pfam Protein kinase domain 5 88 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0022 Vvi-Chr4 240897 241284 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0022 6 97 Receptor kinase-like Gene Family AT5G25930 71.579 3.50e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0022 Pkinase 2.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0022 - K00924 vvi:100257733 174.096