Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0021 ATGGCTATTAAACACGAGTTCCCTAGAAGCGGTAAGGAACTCAACGTCACCAAAATGCGGAAACCACCATTTTTATTTACCAAAATTCCATTCCCCGCTCTATTTCTCCTCCTCGTCTTCTCCTTAACCTTTCAAGTAATTTCCCAAAATCTAGATGCTGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGTCGGAAATTACATGCATCGACAATATCGTCACTGAAATTTCACTCAGCTACAAGACCATCACAAAGAAAATTCCAGCCAGAATTTGTGACCTCAAGAACCTAATCGTACTTGACGTCTCCTACAATTACATTCCAGGCGAGTTCCCGGATATTCTCAATTGCTCTAAGCTCGAATATCTCCTCTTGTTGCAAAACTCCTTCGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTAGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGCGGCTACGGGAGCTGTTCTACTTGTTTATGGTTCAAAATGAGTTCAACGGCACCTGGCCAACAGAGATTGGTAATTTGGCAAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGAAATTTCTGTGGATGACGGAGGCGAATTTGATCGGCGAAATACCGAAGAGCTTCAACAATCTATCGAGTCTGGAACGCTTGGACCTCTCACTCAACGAATTGAATGGTACGATCCCGGTAGGCATGCTTACGTTGAAGAATTTGACCTATTTGTATTTATTCTGTAATAGATTGTCAGGCCGCGTTCCTTCATCGATAGAAGCTTTCAACTTGAAAGAAATTGATCTTTCCGACAACCATTTGACGGGGCCGATACCAGCAGGTTTCGTGAAGCTACAAAATTTGACATGTTTGAATCTTTTTTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTTGAAACCTTCAAAGTTTTTAGCAATAAATTGAGTGGAGTTTTGCCCCCAGCATTTGGCCTTCATTCGGAGCTCAAATTCTTTGAGATTTTTGAGAATAAACTAAGCGGGGAACTACCGCAACATTTATGCGCTAGGGGAACTTTGCTTGGAGTGATTGCTTCCAACAATAATCTCAGCGGAGAAGTGCCCAAGTCCCTCGGGAATTGCAGAAGTTTGCTCACCATTCAGGTTTCCAACAATCGCTTTTCAGGCGAGATTCCTTCTGGCATCTGGACATCCCCGGGCATGGTATCGGTGATGTTAGCTGGAAATTCATTCTCGGGGGCACTTCCAAGTAGATTGGCAAGGAATTTGTCCAGAGTGGATATCAGTAACAACAAGTTTTCTGGTCCAATTCCTACTGAAATCTCTTCTTGGATGAAAATAGGTGTTCTTAATGCCAACAACAATATGTTGTCAGGAAAAATTCCAGTGGAATTGACCAGTCTTTGGAACATCTCTGTTCTGTTGCTTGATGGGAATCAATTCTCGGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCACTCACTAATTTGAATCTCTCAAGAAACAAACTGTCAGGCCTAATTCCCAAGGCATTAGGTTCTTTACCTAGCCTTACTTACCTCGACCTGTCAGAAAACCAGTTCTTAGGTCAAATTCCTTCTGAACTCGGTCATTTGAAGCTTAATATCCTCAATCTTTCGTCCAACCAACTCTCTGGGTTGGTCCCCTTTGAGTTTCAAAATGCAGCATACAATTACAGTTTCTTGAACAATCCCAAACTGTGTGTCAATGTTCCCACTCTGAACCTCCCTAGATGTGATGCCAAACCCGTTGACTCCTACAAATTGTCAACCAAATATCTTGTTATGATCCTAATTTTCGCTCTATCTGGTTTCCTAGCTGTTGCCTTCTTTACCCTGTTCATGGTTCGACACTATCACAGGAAGAATCATAGTCGAGACCAAACAAATTGGAAGCTTACTCCATTCCAAAATCTGGATTTCGATGAACAGAACATATTGTTCGGTTTGACAGAAAATAATTTGATCGGACGTGGTGGGTCAGGGAAAGTATACCGAATTGCTAATGACCGTTCTGGTGAAATCTTTGCTGTTAAAATGATTTGTAACAACGGGAGATTGGATCACAAGCTTCAGAAACCATTCATAGCAAAAGACGAGATATTGGGCACCTTACACCATTCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCACAAGTCTTCTTGTTTATGAGTACATGGAGAACCAAAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATCGTCCATGACAAGTTCAGTTCATAACTTCGTCTTGGATTGGCCAACAAGGTTGCAGATTGCCATCGGAGCTGCAAAAGGCCTACGCCACATGCATGAATACTGTTCTGCCCCGATCATACATCGAGATGTAAAGTCCAGCAACATCTTACTAGACGCTGAGTTCAACGCGAAAATTGCAGATTTTGGATTAGCCAAGATGTTGGTCAAGCAAGGAGAGCCTGACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATTGCCCCCGAGTATGCTTATACAACAAAGGTGAACGAGAAGATTGATGTATATAGCTTTGGAGTAGTTCTGCTTGAGCTGGTGACGGGGAGAGAACCCAACAGCGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTTAGAGAAGGGAAAACCATTGAGGAAGTGGTGGATGAGGAGATCAAGGAACAATGTAACAGAGCACAAGTGACCACTCTCTTCAATCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAGGAGGTTTTGGAAATTCTTCGACAGTGCAATCCTCAGAAGGACCATGGAAGAAAGAAAAAGGACCATGAAGCTGCACTCGAACATACATCGAGATGTAAAGTCCAGCAACATCTTACTAGACGTTGA 3081 0.4333 MAIKHEFPRSGKELNVTKMRKPPFLFTKIPFPALFLLLVFSLTFQVISQNLDAERSILLDVKQQLGNPPSLQSWNSSSSPCDWSEITCIDNIVTEISLSYKTITKKIPARICDLKNLIVLDVSYNYIPGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTANNFSGDIPAAIGRLRELFYLFMVQNEFNGTWPTEIGNLANLEQLAMAYNDKFRPSALPKEFGALKKLKFLWMTEANLIGEIPKSFNNLSSLERLDLSLNELNGTIPVGMLTLKNLTYLYLFCNRLSGRVPSSIEAFNLKEIDLSDNHLTGPIPAGFVKLQNLTCLNLFWNQLSGEIPANISLIPTLETFKVFSNKLSGVLPPAFGLHSELKFFEIFENKLSGELPQHLCARGTLLGVIASNNNLSGEVPKSLGNCRSLLTIQVSNNRFSGEIPSGIWTSPGMVSVMLAGNSFSGALPSRLARNLSRVDISNNKFSGPIPTEISSWMKIGVLNANNNMLSGKIPVELTSLWNISVLLLDGNQFSGELPSQIISWKSLTNLNLSRNKLSGLIPKALGSLPSLTYLDLSENQFLGQIPSELGHLKLNILNLSSNQLSGLVPFEFQNAAYNYSFLNNPKLCVNVPTLNLPRCDAKPVDSYKLSTKYLVMILIFALSGFLAVAFFTLFMVRHYHRKNHSRDQTNWKLTPFQNLDFDEQNILFGLTENNLIGRGGSGKVYRIANDRSGEIFAVKMICNNGRLDHKLQKPFIAKDEILGTLHHSNIVKLLCCISNETTSLLVYEYMENQSLDRWLHGKKQRTSSMTSSVHNFVLDWPTRLQIAIGAAKGLRHMHEYCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNSEHMCLVEWAWDQFREGKTIEEVVDEEIKEQCNRAQVTTLFNLGLMCTTTLPSTRPTMKEVLEILRQCNPQKDHGRKKKDHEAALEHTSRCKVQQHLTRR* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0021 1026 MobiDBLite consensus disorder prediction 998 1019 - -
Vvi4g0021 1026 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Vvi4g0021 1026 Gene3D Transferase(Phosphotransferase) domain 1 790 1020 - -
Vvi4g0021 1026 FunFam Kinase family with leucine-rich repeat domain-containing protein 790 1008 - -
Vvi4g0021 1026 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 211 993 - -
Vvi4g0021 1026 Gene3D Phosphorylase Kinase; domain 1 694 789 - -
Vvi4g0021 1026 ProSiteProfiles Leucine-rich repeat profile. 593 614 IPR001611 GO:0005515
Vvi4g0021 1026 Gene3D Ribonuclease Inhibitor 51 223 IPR032675 -
Vvi4g0021 1026 Gene3D Ribonuclease Inhibitor 473 642 IPR032675 -
Vvi4g0021 1026 FunFam Receptor-like protein kinase HSL1 690 789 - -
Vvi4g0021 1026 FunFam Receptor-like protein kinase HSL1 51 205 - -
Vvi4g0021 1026 SMART LRR_typ_2 330 354 IPR003591 -
Vvi4g0021 1026 SMART LRR_typ_2 568 592 IPR003591 -
Vvi4g0021 1026 SMART LRR_typ_2 593 614 IPR003591 -
Vvi4g0021 1026 SMART LRR_typ_2 161 185 IPR003591 -
Vvi4g0021 1026 SMART LRR_typ_2 544 567 IPR003591 -
Vvi4g0021 1026 SMART LRR_typ_2 259 283 IPR003591 -
Vvi4g0021 1026 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515
Vvi4g0021 1026 MobiDBLite consensus disorder prediction 998 1026 - -
Vvi4g0021 1026 SUPERFAMILY L domain-like 411 628 - -
Vvi4g0021 1026 FunFam Uncharacterized protein 352 642 - -
Vvi4g0021 1026 SUPERFAMILY L domain-like 62 399 - -
Vvi4g0021 1026 Pfam Leucine rich repeat N-terminal domain 52 88 IPR013210 -
Vvi4g0021 1026 ProSiteProfiles Protein kinase domain profile. 710 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0021 1026 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Vvi4g0021 1026 SMART serkin_6 710 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0021 1026 SUPERFAMILY Protein kinase-like (PK-like) 709 992 IPR011009 -
Vvi4g0021 1026 Pfam Protein kinase domain 712 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0021 1026 Pfam Leucine rich repeat 543 581 IPR001611 GO:0005515
Vvi4g0021 1026 FunFam Uncharacterized protein 219 306 - -
Vvi4g0021 1026 Gene3D Ribonuclease Inhibitor 224 472 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0021 Vvi-Chr4 227664 239766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0021 41 1011 Receptor kinase-like Gene Family AT5G25930 54.555 0.0 1019
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0021 Pkinase 7.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0021 K00924 - vvi:100257733 1994.93