Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0020 ATGGGTATCACTTCCAGGCCCATTTTTGAAATCCATATTATTATTATTACTAGGCCCAATTTTGTGATGAAGCCTAAGCCCAAGTGGAAAGATATAAAAAAAAAGGAAGAGAAGGAAAAGAAGGGCTCAGGCTTTAAAAGCGGTAAGGAACTCAACGTCACCAAAATGCGGAAACCACCATTTTTATTTACCAAAATTCCATTCCCCGCTCTATTTCTCCTCCTCGTCTTCTCCTTAACCTTTCAAGTAATTTCCCAAAATCTAGATGCTGAACGATCAATCCTACTAGACGTTAAACAACAACTGGGCAATCCACCGTCACTCCAATCGTGGAATTCCTCATCCTCGCCCTGTGATTGGCCGGAAATTACATGCATCGACAATATTGTCACTGAAATTTCACTCAGCTACAAGACCATCACAAAGAAAATTCCGGCCAGAATTTGTGACCTCAAGAACCTAATCGTACTTGACGTCTCCTACAATTACATTCCAGGCGAGTTCCCGGATATTCTCAATTGCTCTAAGCTTGAATATCTCCTCTTGTTGCAAAACTCCTTTGTGGGTCCAATTCCAGCTGATATTGATCGACTTTCACGTCTCCGGTACCTAGACCTCACCGCAAACAACTTCTCTGGAGATATTCCCGCAGCAATTGGGCGGCTACAGGAGCTGTTCTACTTGTTTCTGGTTCAAAATGAGTTCAACGGCACCTGGCCAACGGAGATTGGTAATTTGGCAAATCTTGAACAATTGGCCATGGCCTATAATGACAAATTCCGGCCTTCAGCCCTTCCAAAGGAGTTTGGCGCATTGAAGAAGCTGAAGTTTCTGTGGATGACGGAGGCGAATTTGATCGGCGAAATACCGAAGAGCTTCAACAATCTATCGAGTCTGGAACGCTTGGACCTCTCACTCAACGAATTGAATGGTACGATCCCGGTAGGCATGCTTACGTTGAAGAATTTGACCTATTTGTATTTATTCTGTAATAGATTGTCAGGCCGCGTTCCTTCATCGATAGAAGCTTTCAACTTGAAAGAAATTGATCTTTCCGACAACCATTTGACGGGGCCGATACCAGCAGGTTTCGTGAAGCTACAAAATTTGACGTGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAACAAATATAAGCCTCATTCCTACACTTGAAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTGCCCCCAGCATTTGGCCTTCATTCGGAGCTCAAATTCTTTGAGATTTTTGAGAATAAACTAAGCGGGGAATTACCGCAACATTTATGCGCTAGGGGGACTTTGCTTGGAGTGATTGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCAAGTCCCTCGGGAATTGCAAAAGTTTGCTCACCATTCAGGTTTCCAACAATCGCTTTTCAGGCGAGATTCCTTCCGGCATCTGGACATCCCCGGACATGGTATCGGTGATGTTAGCTGGAAATTCATTCTCGGGGGCACTTCCAAGTAGATTGACAAGGAATTTGTCCAGAGTGGATATCAGTAACAACAAGTTTTCTGGTCAAATTCCTGCTGAAATCTCTTCTTGGATGAACATAGGTGTGCTCAATGCCAACAACAATATGTTGTCAGGAAAAATTCCAATGGAATTGACCAGTCTTTGGAACATCTCTGTTCTGTTGCTTGATGGGAATCAATTCTCTGGTGAACTTCCATCCCAGATCATCTCATGGAAGTCGCTCACTAATTTGAATCTCTCAAGAAACAAACTTTCAGGCCTAATTCCCAAGGCATTAGGTTCTTTACCTAGCCTTACTTACCTCGACCTGTCAGAAAACCAGTTCTTAGGTCAAATTCCTTCTGAACTCGGTCATTTGAAGCTTAATATCCTCAATCTTTCGTCTAACCAACTCTCTGGGTTGGTCCCCTTTGAGTTTCAAAATGAAGCATACAATTACAGTTTCTTGAACAATCCCAAGCTGTGTGTCAATGTTGGCACTCTGAAACTCCCTAGATGTGATGCCAAAGTCGTTGACTCCGACAAATTGTCAACCAAATATCTCGTTATGATCCTAATTTTAGCTCTATCTGGTTTCCTAGCTGTTGTTTTCTTTACCCTGGTCATGGTTCGAGACTATCACAGGAAGAATCATAGTCGAGACCATACAACTTGGAAGCTTACTCGATTCCAAAATCTGGATTTCGATGAACAGAACATATTGTCCGGTTTGACAGAAAATAATTTGATCGGACGTGGTGGGTCAGGGAAAGTATACCGAATTGCTAATGACCGTTCTGGTAAAATCTTTGCTGTTAAAATGATTTGTAACAACGGGAGATTGGATCACAAGCTTCAGAAACCATTCATAGCAAAAGACGAGATATTGGGCACCTTACACCATTCCAATATAGTGAAGTTGTTGTGCTGCATATCAAATGAAACCACAAGTCTTCTTGTTTACGAGTACATGGAGAACCAGAGTTTGGATAGATGGCTTCATGGGAAGAAGCAGAGAACATTGTCCATGACAAGTTTAGTTCATAACTTCATCTTGGATTGGCCAACAAGGTTGCAGATTGCCATCGGAGTTGCAAAAGGCCTACGCCACATGCATGAATACTGTTCTGCCCCGATCATACATCGAGATGTAAAGTCCAGCAACATCTTACTAGACGCTGAGTTCAACGCGAAAATTGCAGATTTTGGATTAGCCAAGATGTTGGTCAAGCAAGGAGAGCCTGACACCATGTCAGGAGTTGCAGGCTCTTACGGATATATTGCCCCCGAGTATGCTTATACAACAAAGGTGAACGAGAAGATTGATGTATATAGCTTTGGAGTAGTTCTGCTTGAGCTGGTGACGGGGAGAGAACCCAACAACGAGCACATGTGCCTTGTAGAATGGGCATGGGATCAGTTTAGAGAAGGGAAAACCATTGAGGAAGTGGTGGATGAGGAGATCAAGGAACAATGTGACAGAGCACAAGTGACCACTCTCTTCAATCTAGGCCTCATGTGCACTACCACATTACCATCCACTAGGCCAACAATGAAGGAGGTTTTGGAAATTCTTCAACAGTGCAATCCTCAGGAGGACCATGGAAGAAAGAAAAAGGACCATGAAGCTACACCCCTGCTTCTAAATGGCACTTAA 3165 0.4306 MGITSRPIFEIHIIIITRPNFVMKPKPKWKDIKKKEEKEKKGSGFKSGKELNVTKMRKPPFLFTKIPFPALFLLLVFSLTFQVISQNLDAERSILLDVKQQLGNPPSLQSWNSSSSPCDWPEITCIDNIVTEISLSYKTITKKIPARICDLKNLIVLDVSYNYIPGEFPDILNCSKLEYLLLLQNSFVGPIPADIDRLSRLRYLDLTANNFSGDIPAAIGRLQELFYLFLVQNEFNGTWPTEIGNLANLEQLAMAYNDKFRPSALPKEFGALKKLKFLWMTEANLIGEIPKSFNNLSSLERLDLSLNELNGTIPVGMLTLKNLTYLYLFCNRLSGRVPSSIEAFNLKEIDLSDNHLTGPIPAGFVKLQNLTCLNLFWNQLSGEIPTNISLIPTLETFKVFSNQLSGVLPPAFGLHSELKFFEIFENKLSGELPQHLCARGTLLGVIASNNNLSGEVPKSLGNCKSLLTIQVSNNRFSGEIPSGIWTSPDMVSVMLAGNSFSGALPSRLTRNLSRVDISNNKFSGQIPAEISSWMNIGVLNANNNMLSGKIPMELTSLWNISVLLLDGNQFSGELPSQIISWKSLTNLNLSRNKLSGLIPKALGSLPSLTYLDLSENQFLGQIPSELGHLKLNILNLSSNQLSGLVPFEFQNEAYNYSFLNNPKLCVNVGTLKLPRCDAKVVDSDKLSTKYLVMILILALSGFLAVVFFTLVMVRDYHRKNHSRDHTTWKLTRFQNLDFDEQNILSGLTENNLIGRGGSGKVYRIANDRSGKIFAVKMICNNGRLDHKLQKPFIAKDEILGTLHHSNIVKLLCCISNETTSLLVYEYMENQSLDRWLHGKKQRTLSMTSLVHNFILDWPTRLQIAIGVAKGLRHMHEYCSAPIIHRDVKSSNILLDAEFNAKIADFGLAKMLVKQGEPDTMSGVAGSYGYIAPEYAYTTKVNEKIDVYSFGVVLLELVTGREPNNEHMCLVEWAWDQFREGKTIEEVVDEEIKEQCDRAQVTTLFNLGLMCTTTLPSTRPTMKEVLEILQQCNPQEDHGRKKKDHEATPLLLNGT* 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0020 1054 Gene3D Ribonuclease Inhibitor 509 748 IPR032675 -
Vvi4g0020 1054 Gene3D Ribonuclease Inhibitor 88 261 IPR032675 -
Vvi4g0020 1054 ProSiteProfiles Protein kinase domain profile. 747 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0020 1054 ProSiteProfiles Leucine-rich repeat profile. 630 651 IPR001611 GO:0005515
Vvi4g0020 1054 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 72 1023 - -
Vvi4g0020 1054 ProSitePatterns Protein kinases ATP-binding region signature. 753 776 IPR017441 GO:0005524
Vvi4g0020 1054 Pfam Leucine Rich Repeat 345 367 IPR001611 GO:0005515
Vvi4g0020 1054 SMART serkin_6 747 1027 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0020 1054 MobiDBLite consensus disorder prediction 1035 1054 - -
Vvi4g0020 1054 FunFam Uncharacterized protein 256 343 - -
Vvi4g0020 1054 SMART LRR_typ_2 296 320 IPR003591 -
Vvi4g0020 1054 SMART LRR_typ_2 630 651 IPR003591 -
Vvi4g0020 1054 SMART LRR_typ_2 367 391 IPR003591 -
Vvi4g0020 1054 SMART LRR_typ_2 581 604 IPR003591 -
Vvi4g0020 1054 SMART LRR_typ_2 198 222 IPR003591 -
Vvi4g0020 1054 SMART LRR_typ_2 605 629 IPR003591 -
Vvi4g0020 1054 Pfam Leucine rich repeat 580 618 IPR001611 GO:0005515
Vvi4g0020 1054 SUPERFAMILY Protein kinase-like (PK-like) 736 1029 IPR011009 -
Vvi4g0020 1054 SUPERFAMILY L domain-like 448 664 - -
Vvi4g0020 1054 Gene3D Transferase(Phosphotransferase) domain 1 828 1050 - -
Vvi4g0020 1054 FunFam Uncharacterized protein 389 679 - -
Vvi4g0020 1054 Gene3D Ribonuclease Inhibitor 262 508 IPR032675 -
Vvi4g0020 1054 SUPERFAMILY L domain-like 99 433 - -
Vvi4g0020 1054 ProSitePatterns Serine/Threonine protein kinases active-site signature. 882 894 IPR008271 GO:0004672|GO:0006468
Vvi4g0020 1054 FunFam Receptor-like protein kinase HSL1 88 242 - -
Vvi4g0020 1054 FunFam Receptor-like protein kinase HSL1 727 826 - -
Vvi4g0020 1054 Pfam Protein kinase domain 749 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0020 1054 FunFam Kinase family with leucine-rich repeat domain-containing protein 827 1045 - -
Vvi4g0020 1054 Pfam Leucine rich repeat N-terminal domain 89 125 IPR013210 -
Vvi4g0020 1054 Gene3D Phosphorylase Kinase; domain 1 753 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0020 Vvi-Chr4 212861 224640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0020 78 1052 Receptor kinase-like Gene Family AT5G25930 54.332 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0020 Pkinase 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0020 K00924 - vvi:100262856 1981.84