Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0019 ATGACGGAGGCGAATTTGATTGGTGAAATACCAGAGAGCTTCAACAATCTATCGAGTCTGGAACTCTTGGACCTCTCACTCAACAAATTGGAAGGTACGATCCCGGGAGGCATGCTTACGTTGAAAAATTTGAACTATTTGCATTTATTCATTAATAGATTGTCCGGCCACATTCCTTCATCCATAGAAGCTCTCAACTTGAAACAAATTGATCTTTCCGACAACCATTTGACGGGGTCCATACCAGCGGGTTTCGGGAAGCTACAAAATTTGACGGGTTTGAATCTTTTCTGGAATCAGTTGTCAGGAGAGATACCAGCAAATATAAGCCTCATTCCTACACTGGGAACCTTCAAAGTTTTTAGCAATCAATTGAGTGGAGTTTTACCTCCAGCATTTGGCCTTCATTCGGAGCTCAAACTCTTTGAGGTTTCCGAGAATAAACTAAGCGGGGAATTACCTCAACATTTATGCGCTAGGGGGGCTTTGCTTGGAGTGGTCGCTTCCAACAACAATCTCAGCGGGGAAGTGCCCACGTCCCTCGGAAATTGCACAAGTTTGCTCACCATTCAGCTTTCCAACAATCGTTTTTCAGGCGGGATTCCTTCCGGCATCTGGACATCCCTGGACATGGTATCGGTGATGTTAGATGGAAATTCATTCTCAGGGACACTTTCAAGTAAATTGGCAAGGAATTTGTCTAGAGTGGAGATCGCTAACAACAAGTTTTATGGTCCAATTCCTGCTGAAATCTCTTCCTGGATGAACATCTCTGTGCTCCATGCCACCAATAACAATTTTTCTGGTCCAATTCCTGCCGGGATATCTTCTTTGGTGAATCTAGTTGGGTTATATTTGAGCAATAACAGGTTTTATGGTCCAATTCCTGCCGGGATATTTTCTTTGGTGAATCTAACTAATTTAGATGTGAGCAATAACAGGTTTTCTGGTCCAATTCCTGCCGGGATATCTTCTTTGGTGAATCTAGTTGAGTTAGATGTGCGCAATAACATGTTGTCTGGTTCAATACCTGCTGGAATATCATCTTTGTTGCTTCTATCGGTGTTCAAGGCAAGCAATAATCTATTTTCAGGAGAAATTCCAGTGGAATTGACTAGTCTTCCATCCATATATATTCTGTGGCTTGATGGGAATCAATTGTCAGGCCAACTTCCTCATGATATAGTCTCCTGGAAGTCACTATTTGCTTTGGATTTGTCAACAAATCATCTCTCTGGCCCAATTCCAAAGGCCATTGGATCTTTACATAGCCTCGTGTTTCTTGACCTATCTGAAAACCAATTCTCAGGTGAAATCCCCCATGAATTCAGTCATTTCGTGCCTAACACCTTTAACCTTTCATCCAACAATCTATTTGGGGAAATCCCACCCGCCTTTGAAAAGTGGGAATATGAAAACAGTTTCTTGAACAATTCCAATCTGTGTGCCAATATTGAAATTCTGAAGAGTTGCTACTCTAAAGCCAGTAACTCTAAATTGTCAACCAATTACCTAGTCATGATTATATCTTTCACCCTAACTGCTTCCCTGGTTATTGTATTTCTTATCTTTTCCATGGTTCAAAAGTATCAAAGGTGGGACCAAGGGAGCAATGTTGAAACATGGAAGATGACATCCTTCCAAAAGTTTGATTTCACTGAATCCAACATATTGTCGAGTTTGGCACAAAATAGTTTAATTGGAAGTGGGGGGTCAGGGAAGGTATATCGTACCATCATTAACCATTCTGGTGAAGTGGTCGCTGTTAAATGGATTTCGAATAATAGGCAACTAGGCCAGAACCTCGAGAAGCAATTCGTAGCAGAAGTCCAAATATTAGGTATGATACGCCATGCCAATATAGTGAAGTTGCTATGCTGCATTTCGAGTGAAAGCTCAAAGATTCTTGTTTATGAGTACATGGAGAACCAAAGCTTAGATAGATGGCTTCATGGTAAGAAGAGGGCAGTGTCCTCAGTGGATTCAGCAAGTGATATTATCTTGGACTGGCCGATGAGGTTGCAAATTGCCATTGGAGCTGCTCGAGGCCTATGCTATATGCACCATGATTTCTCTCCCCCAATCATTCATCGAGATGTGAAGTCCAGCAACATCTTATTGGATTCTGAATTTAATACAAAAATTGCAGATTTTGGATTGGCCAAAATGTTAGCAAAGCAAGAAGAAGACCCTGAAACAATGTCTGTGGTTGTAGGCACTTTCGGATATATTGCCCCAGAGTATGCTTATACAAGAAAGGCGAATAAGAAGATCGACGTCTACAGTTTTGGAGTTGTGCTTCTAGAGTTGGCCACTGGAAGAGAAGCCAATAGGGGGAACGAGCATATGAACCTTGCTCAATGGGCATGGCAGCACTTTGGAGAGGGAAAATCCATTGTGGAAGCACTGGATGAGGAGATCATGGAAGAATGCTTCATGGAAGAAATGATCACTGTCTTCAAACTAGGCCTCATGTGTACTAGCAAAGCACCTTCTGACAGGCCTTCCATGAGGGAGGTATTGCTAATTCTTGATCGACGTGGTCCTCACCAAGGTCATGCTACATAA 2568 0.4213 MTEANLIGEIPESFNNLSSLELLDLSLNKLEGTIPGGMLTLKNLNYLHLFINRLSGHIPSSIEALNLKQIDLSDNHLTGSIPAGFGKLQNLTGLNLFWNQLSGEIPANISLIPTLGTFKVFSNQLSGVLPPAFGLHSELKLFEVSENKLSGELPQHLCARGALLGVVASNNNLSGEVPTSLGNCTSLLTIQLSNNRFSGGIPSGIWTSLDMVSVMLDGNSFSGTLSSKLARNLSRVEIANNKFYGPIPAEISSWMNISVLHATNNNFSGPIPAGISSLVNLVGLYLSNNRFYGPIPAGIFSLVNLTNLDVSNNRFSGPIPAGISSLVNLVELDVRNNMLSGSIPAGISSLLLLSVFKASNNLFSGEIPVELTSLPSIYILWLDGNQLSGQLPHDIVSWKSLFALDLSTNHLSGPIPKAIGSLHSLVFLDLSENQFSGEIPHEFSHFVPNTFNLSSNNLFGEIPPAFEKWEYENSFLNNSNLCANIEILKSCYSKASNSKLSTNYLVMIISFTLTASLVIVFLIFSMVQKYQRWDQGSNVETWKMTSFQKFDFTESNILSSLAQNSLIGSGGSGKVYRTIINHSGEVVAVKWISNNRQLGQNLEKQFVAEVQILGMIRHANIVKLLCCISSESSKILVYEYMENQSLDRWLHGKKRAVSSVDSASDIILDWPMRLQIAIGAARGLCYMHHDFSPPIIHRDVKSSNILLDSEFNTKIADFGLAKMLAKQEEDPETMSVVVGTFGYIAPEYAYTRKANKKIDVYSFGVVLLELATGREANRGNEHMNLAQWAWQHFGEGKSIVEALDEEIMEECFMEEMITVFKLGLMCTSKAPSDRPSMREVLLILDRRGPHQGHAT* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0019 855 Gene3D Ribonuclease Inhibitor 168 495 IPR032675 -
Vvi4g0019 855 FunFam Kinase family with leucine-rich repeat domain-containing protein 543 640 - -
Vvi4g0019 855 Pfam Leucine Rich Repeat 66 88 IPR001611 GO:0005515
Vvi4g0019 855 SMART serkin_6 561 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0019 855 ProSiteProfiles Protein kinase domain profile. 561 855 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0019 855 SUPERFAMILY Protein kinase-like (PK-like) 555 844 IPR011009 -
Vvi4g0019 855 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 333 839 - -
Vvi4g0019 855 SMART LRR_typ_2 422 445 IPR003591 -
Vvi4g0019 855 SMART LRR_typ_2 374 398 IPR003591 -
Vvi4g0019 855 SMART LRR_typ_2 88 112 IPR003591 -
Vvi4g0019 855 SMART LRR_typ_2 326 350 IPR003591 -
Vvi4g0019 855 SMART LRR_typ_2 278 302 IPR003591 -
Vvi4g0019 855 SMART LRR_typ_2 17 41 IPR003591 -
Vvi4g0019 855 Pfam Protein kinase domain 563 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0019 855 ProSitePatterns Protein kinases ATP-binding region signature. 567 590 IPR017441 GO:0005524
Vvi4g0019 855 Gene3D Transferase(Phosphotransferase) domain 1 641 851 - -
Vvi4g0019 855 FunFam Predicted protein 65 162 - -
Vvi4g0019 855 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Vvi4g0019 855 SUPERFAMILY L domain-like 213 477 - -
Vvi4g0019 855 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 225 495 - -
Vvi4g0019 855 Gene3D Ribonuclease Inhibitor 1 65 IPR032675 -
Vvi4g0019 855 Gene3D Phosphorylase Kinase; domain 1 534 640 - -
Vvi4g0019 855 Gene3D Ribonuclease Inhibitor 66 160 IPR032675 -
Vvi4g0019 855 FunFam Kinase family with leucine-rich repeat domain-containing protein 641 855 - -
Vvi4g0019 855 SUPERFAMILY L domain-like 5 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0019 Vvi-Chr4 203083 205748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0019 5 848 Receptor kinase-like Gene Family AT5G25930 44.408 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vvi4g0019 Pkinase 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0019 K00924 - vvi:100252254 1276.15