Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0017 ATGCCAGGCCAGTGGGAATACCAAGTTGATCCAGGTCAGTGCTCTTCCCTACTCGCTCAGCGTGTCCACGTGCCGCTCTTCAATGTCTGTTCCGTCGTTCATCGCTTCGGAAAACCCCAGACATGCAAGCATGTCATCAAGAGTTGCCATATGGAAGGCGGTTTCGAAATGAGAATGGGATGCCTCAGAGACGTCAACGTCATCTCTGGTCTGCCGGCGGCGACCAGCGCGGGGAGATTGGATATACAGGACGATGAGAGGCACGTGACAAGGTCTGCTTTTCCCACCTGGCAAGATGTCCTTGCTGCTGACTCCAAAAGCATAGAGAATGCCATAAGACGTGGCGGTTTGGCTGTGACTGAGGTTTCTTGTATCAAGAAAATGTTGAACTGTTTGCTGGGAAGAAAATGCAAATTATGCCTTGGGTACTTGTGCGATTTAACAGTTGATGAAATCAAGGCGGATGCCATGACAAAAGGGTGCACAGCTTGCCTTGCACCGAGTGAATTGAGAAGTCCAATCCCTGCTTCTTCAACTTGTGATCATACAGCATTACTCATGATTGAGCGGACAACGAACCTTGACTGGTACAAGGACCCTACCCTCCTTGAGGCTCTTGACAGGATTCACGAGCCCAAGAGGCTCATGGATAAGCCTCCTCATCTCCCGCTACAGGACGTTTACAAGATTGGTGGCATTGGCACTATTCCTGTGGGTCGCGTTGAAACTGGTATCATTAAACTTCATGATCCTGCAAGGAAGCTGCCAACCTCACAGCCAGGTCATTATCGAGAATCACCATGGCCAAATTGGAAATGGTTATGTCCCAGTCCTTGGCTGCTACACCTCTCACATTGCGGTAAAGTTTGTTGA 873 0.496 MPGQWEYQVDPGQCSSLLAQRVHVPLFNVCSVVHRFGKPQTCKHVIKSCHMEGGFEMRMGCLRDVNVISGLPAATSAGRLDIQDDERHVTRSAFPTWQDVLAADSKSIENAIRRGGLAVTEVSCIKKMLNCLLGRKCKLCLGYLCDLTVDEIKADAMTKGCTACLAPSELRSPIPASSTCDHTALLMIERTTNLDWYKDPTLLEALDRIHEPKRLMDKPPHLPLQDVYKIGGIGTIPVGRVETGIIKLHDPARKLPTSQPGHYRESPWPNWKWLCPSPWLLHLSHCGKVC* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0017 290 PANTHER - 91 155 - -
Vvi4g0017 290 SUPERFAMILY Translation proteins 216 259 IPR009000 -
Vvi4g0017 290 SUPERFAMILY Bet v1-like 12 91 - -
Vvi4g0017 290 Gene3D - 4 94 IPR023393 -
Vvi4g0017 290 FunFam Polyadenylate-binding protein RBP45C 4 90 - -
Vvi4g0017 290 Gene3D - 180 211 IPR027417 -
Vvi4g0017 290 Gene3D Translation factors 212 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0017 Vvi-Chr4 185878 188582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0017 187 247 Eukaryotic Initiation Factors Gene Family AT5G60390 83.607 9.90e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0017 K14496 K03231 vvi:100267793 137.502