Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0012 ATGGAGGAGTCTCCTCAGTGGCTTAATATGATTCCAAAGGATAGAGAATGGCATGCAAGAGAAAGTAAAAGAAGGCATGGTGTTTCAGAGGACAAGAAGCTGGAGCTGAGGCTTGGCCCTCCAGGAGAAGACCGGTCTCTTCTCTCTCTCAGCTATTTGCCATCCATGGCTTCCATAACCCACCTCCATACCAACTCTCATGGAGCCAAAAGAGGATTTCAGGACACACTTGAAGCAAAACCATGGCCTCGTGTCTCTTTGTCCTCATCTTCTTCCGCTTTTGAGAAGCAGAATCACCAGCCAAAGTCCTCATACCTTCAGTACCCCGTGGTACCCCAGACCTTGGGTGCCATAGTCGATGAATCCTCAAAGCCACGCCCCACAAGTATGGCAGATCAGGCGCAGCAGTATAAGGATAAGATGGCATGTTCAGTTGCTGCTGATGCCTCAGTTTCTGCAAATACAGCTGTGCCCAACTCCTCCCAGAAAAGAATTGAACATGCTCCAGTGGTTGGGTGGCCTCCAATCCGTTCATTCAGGAAGAATCTTGTGAATAGCAGCTCCTCAAAGCCTGAATCAGAGTCACCAAACAAAATTCCTGAGGAGACCGGCTATGGAAAATCTGAAAGTTCCAAAACTGGATTGTTTGTAAAGATTAACATGGATGGTGTCCCAATTGGAAGAAAAGTGGATCTCAAAGCCTGTGACAGCTATGAAAAACTCTCATATGCTGTAGATGATCTCTTCAGAGGTCTTCTTTCAGCTCAAAATGAATCATCTGCTGGCACTGGAAATGAAAACAAGATGGAGGAAGCAAAAACCATGGCAGGATTATTCGATGGAAGTGGTGAATATACTCTAGTTTATGAGGATAATGAAGGAGACAGAATGCTTGTTGGAGATGTCCCATGGCACATGTTTGTATCTACAGTGAGGAGATTGCGCGTGTTGAAGAGCTCTGAACTTGCCATCCTCTGTGTGAGTAGCAGCAAGCAAGAGAAGCCACCCCCTGGTTCTGCAGTTGAATTTGGAAAATGA 1038 0.4615 MEESPQWLNMIPKDREWHARESKRRHGVSEDKKLELRLGPPGEDRSLLSLSYLPSMASITHLHTNSHGAKRGFQDTLEAKPWPRVSLSSSSSAFEKQNHQPKSSYLQYPVVPQTLGAIVDESSKPRPTSMADQAQQYKDKMACSVAADASVSANTAVPNSSQKRIEHAPVVGWPPIRSFRKNLVNSSSSKPESESPNKIPEETGYGKSESSKTGLFVKINMDGVPIGRKVDLKACDSYEKLSYAVDDLFRGLLSAQNESSAGTGNENKMEEAKTMAGLFDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVRRLRVLKSSELAILCVSSSKQEKPPPGSAVEFGK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0012 345 Gene3D - 208 331 - -
Vvi4g0012 345 MobiDBLite consensus disorder prediction 84 107 - -
Vvi4g0012 345 MobiDBLite consensus disorder prediction 18 40 - -
Vvi4g0012 345 MobiDBLite consensus disorder prediction 183 210 - -
Vvi4g0012 345 ProSiteProfiles PB1 domain profile. 214 329 IPR000270 GO:0005515
Vvi4g0012 345 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 323 IPR003311 GO:0005634|GO:0006355
Vvi4g0012 345 MobiDBLite consensus disorder prediction 18 41 - -
Vvi4g0012 345 Pfam AUX/IAA family 34 325 IPR033389 -
Vvi4g0012 345 SUPERFAMILY CAD & PB1 domains 209 316 - -
Vvi4g0012 345 FunFam Auxin-responsive protein 209 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0012 Vvi-Chr4 163293 164956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0012 209 322 B3 DNA Binding Superfamily AT4G23980 31.897 2.31e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vvi4g0012 AUX_IAA 1.1e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0012 K14484 - vvi:100247345 664.07