Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0006 ATGCCTGAACTGCGTAGTGGAGTGCGCAGAGGCCGGGCACACAGGAACCCCAACGCGATTCGAATCGAGGACCAGAGTGTGACAGCGGTACGGACCCGACCTAGGAGGGCCGCGCAGAATAGGAGGGGCGAGGTCGTTGTCGATGGTGGAGAGAGGGACATCTTGAGGGGGTTGGGTCTGCAAGCGACGTCGTTTGAGGAAGAGGAGGTTAAGGTTTTGGGTGCGACTGGTGGTGGTAGTGGTCCCCCAAGAGAAGAGGTTGCGGAGAAGGAGATGGATGAGTACGATAGCGGCGGAAGGAGCGGCGACAAGGGTCCCGGAGCTGAAGATGAGGGAAGCACTGCGCCGCTTCCTGAGAAGGTCCAGGTGGGTGGTTCTCCAGTTTACAAAATTGATAGAAAACTGGGGAAAGGAGGCTTTGGACAAGTTTATGTTGGGCGACGCATTGGTGGAAATTCAAATGAAAGAACTGGCGCAGGAGCTGTAGAGGTTGCCTTAAAATTTGAGCATAGAAGCAGCAAAGGGTGCAATTATGGACCACCATATGAGTGGCAAGTTTACAATGCACTTGGTGGCAGCCATGGTGTGCCACGGGTACATTACAAGGGCCGACAAGGTGACTACTATGTCATGGTTATGGATATGCTTGGACCTAGTTTGTGGGATGTTTGGAATAACAACTCACACACGATGTCCATTGAAATGGTAGCATGTATTGCTATTGAAGCAATCTCTATATTAGAGAAGATGCACTCTAGAGGGTATGTGCATGGGGATGTAAAGCCTGAGAACTTTTTGCTTGGTCCTCCAGGAACTAATGAGGAGAAAAAACTGTTTCTTGTTGACCTTGGATTAGCCACCAAGTGGAGAGATAGTTCAACTGGCCTTCATGTTGAATATGATCAACGGCCAGATGTTTTCAGGGGAACAGTACGTTATGCTAGTGTGCATGCTCACCTTGGAAGGACTGGAAGCAGAAGAGATGATTTGGAATCTCTTGCTTACACCCTCATTTTTCTTCTCCGTGGACGGCTGCCTTGGCAAGGTTACCAGGGAGAGAATAAAGGGTACCTTGTTTGCAAAAAGAAGATGGCAACATCTCCAGAAGCTTTGTGTTGCTTTTGTCCTCAGCCTTTTCGGCAGTTTGTTGAATATGTGGTGAACTTGAAGTTTGATGAAGAACCTAATTATGCAAAATATATCTCCCTCTTTGATGGGATTGTGGGTCCAAATCCGGATATCAGGCCAATAAACACTGATGGTGCTCAGAAGCTTATATATCAGGTTGGACATAAGAGAGGACGACTGACAATGGAGGAGGATGATGATGAGCAACCAAAGAAGAAGGTCCGAATGGGAATGCCTGCAACACAATGGATTAGTGTTTACAATGCTCGTCGGCCTATGAAGCAAAGGTATCACTATAACGTTGCAGATGTGAGACTTCCCCAGCACGTAGAGAAAGGAAATGAAGATGGATTATATATTAGTAGTGTGGCTTCTTGTTCAAACTTATGGGCCCTAATTATGGATGCTGGCACAGGCTTCAGTGCTCAAGTTTATGAACTCTCTCCTTATTTCCTTCACAAGGAATGGATTATGGAACAATGGGAGAAGAACTATTACATCAGTGCAATAGCAGGAGCTAATAATGGGAGCTCATTGGTGGTGATGTCCAAGGGCACGCAATATTTACAGCAGTCCTATAAAGTCAGTGAGTCATTTCCATTTAAGTGGATAAATAAAAAATGGAGAGAGGGTTTCTATGTTACTGCTATGGCCACTGCAGGAAGTAGATGGGCGATTGTCATGTCTCGTGGTGCTGGATTTTCTGATCAGGTTGTAGAGCTAGATTTTTTGTATCCTAGTGAAGGTATTCATCGGAGGTGGGATAATGGTTATCGCATCACAGCAACTGCAGCAACCTGGGACCAGGCTGCTTTTGTTCTTAGTGTACCAAGAAGAAAACCTGCAGATGAAACACAAGAGACGCTCAGAACTTCTGCTTTTCCTAGCACACATGTCAAGGAGAAATGGGCAAAAAATCTTTACATTGCATCAGTTTGCTATGGTCGGACTGTTTCTTGA 2088 0.4631 MPELRSGVRRGRAHRNPNAIRIEDQSVTAVRTRPRRAAQNRRGEVVVDGGERDILRGLGLQATSFEEEEVKVLGATGGGSGPPREEVAEKEMDEYDSGGRSGDKGPGAEDEGSTAPLPEKVQVGGSPVYKIDRKLGKGGFGQVYVGRRIGGNSNERTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHYKGRQGDYYVMVMDMLGPSLWDVWNNNSHTMSIEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTNEEKKLFLVDLGLATKWRDSSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLIFLLRGRLPWQGYQGENKGYLVCKKKMATSPEALCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTDGAQKLIYQVGHKRGRLTMEEDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLPQHVEKGNEDGLYISSVASCSNLWALIMDAGTGFSAQVYELSPYFLHKEWIMEQWEKNYYISAIAGANNGSSLVVMSKGTQYLQQSYKVSESFPFKWINKKWREGFYVTAMATAGSRWAIVMSRGAGFSDQVVELDFLYPSEGIHRRWDNGYRITATAATWDQAAFVLSVPRRKPADETQETLRTSAFPSTHVKEKWAKNLYIASVCYGRTVS* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0006 695 MobiDBLite consensus disorder prediction 84 107 - -
Vvi4g0006 695 ProSiteProfiles Protein kinase domain profile. 129 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0006 695 MobiDBLite consensus disorder prediction 1 20 - -
Vvi4g0006 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Vvi4g0006 695 PANTHER CASEIN KINASE-RELATED 129 661 - -
Vvi4g0006 695 SUPERFAMILY Protein kinase-like (PK-like) 129 410 IPR011009 -
Vvi4g0006 695 Gene3D Transferase(Phosphotransferase) domain 1 107 451 - -
Vvi4g0006 695 ProSitePatterns Protein kinases ATP-binding region signature. 135 167 IPR017441 GO:0005524
Vvi4g0006 695 SMART serkin_6 129 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0006 695 Pfam Protein kinase domain 129 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi4g0006 695 MobiDBLite consensus disorder prediction 73 122 - -
Vvi4g0006 695 CDD STKc_CK1 129 404 - -
Vvi4g0006 695 FunFam casein kinase 1-like protein HD16 102 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0006 Vvi-Chr4 69576 78053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0006 127 404 MAP Kinase Kinase Kinase AT5G50180 23.469 4.07e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vvi4g0006 Pkinase 1.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0006 - - vvi:100254265 1422.14