Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0002 ATGTGGAAGCAACTAGTGAGGATTACTCTGTTGAACCCACAGATAGTAGGAAGCCATTCTGGAGCATTGGATGGTGGCTTGGACATTCCTCACAGTGACAAGAGATTTTTTGGATTCTCAAATGATAGCAAGCAGCTTGATGCCGAGGTTCACCGAAAGTGTATTTATGTTGGCCATGTTAGTGCATATATGGGGACTTTTATGGAAGATGAACCAGAGACGTACCAATCTCACTTCAGTGAATATATTAAGAAGATAGTTGAGCAAGATGGCATCGAGGAGATGTACAAGAAGGTTCATGCTACCATCTGTGCAAACCCCATTCAAAAGAAGGTTGAGAAGCAGCCACCGAAAGAGCACAAGAGGTACAATTTGAAGAAGCTGACCTATGAGGAAAGGAAAGCTAAGTTGGTTGAACGATTGAATGCTCTCAACTCAACAACTGCTAATGATGAGGATAATGAGGATGATGGGGATGATGAATGA 486 0.4239 MWKQLVRITLLNPQIVGSHSGALDGGLDIPHSDKRFFGFSNDSKQLDAEVHRKCIYVGHVSAYMGTFMEDEPETYQSHFSEYIKKIVEQDGIEEMYKKVHATICANPIQKKVEKQPPKEHKRYNLKKLTYEERKAKLVERLNALNSTTANDEDNEDDGDDE* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0002 161 FunFam Uncharacterized protein 5 148 - -
Vvi4g0002 161 Coils Coil 127 147 - -
Vvi4g0002 161 PRINTS Ribosomal protein L5 signature 63 83 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g0002 161 PRINTS Ribosomal protein L5 signature 21 40 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g0002 161 Gene3D - 5 148 - -
Vvi4g0002 161 PANTHER RIBOSOMAL PROTEIN L5-RELATED 13 147 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Vvi4g0002 161 SUPERFAMILY Translational machinery components 15 108 - -
Vvi4g0002 161 MobiDBLite consensus disorder prediction 141 161 - -
Vvi4g0002 161 Pfam Ribosomal L18 C-terminal region 92 145 IPR025607 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0002 Vvi-Chr4 16220 16770 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0002 5 147 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 67.133 1.20e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0002 K02932 - vvi:100264558 271.166