Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1313 ATGGAGAGGGAGCAGTTGCTGAGCATGGGTTTTCCTGACGATTTGGCCTCCCAAGCTCTCGCTGCCACAGGTGGCAAATCGATCCTCAAAGCCACCGAATGGATTCTTGGCCGCAACAAATCCGATTCTCAAACCCCTGACGAAAACCCCAATTCATCCCCATCCCCATCCCCATTCCAGCCCAAGCTCGATCGCTTCTTTCACTTTCAATCCAAGCCCTCCAATCCCCCCCAAATCCAAAAACAACACTGCGACACGCCCTCACTGCCCAGTCCCCCCTCCAAACGACTCCGTTTAGAGGCAGAAAACAGTCCCCACCAGCCCTTATCTGAGCGAATGCGACCTCGTACTGTGGACGATGTGGTGGGCCAAGACCATCTTCTCTCTCACAAATCCCTGCTTCGCTCGGCCATCGATTCCAACCGTCTTCCTTCTATAATCCTATGGGGCCCACCGGGCACCGGCAAGACCTCCATTGCCAAGGCCATTGTCAATTCCTCCTCCCAGCCTTCCTCCTATCGATTTGTTTCCTTATCGGCTGTCACTGCTGGTGTCAAGGACGTGAGGGACGTCGTGGAGGAGGCTAGAAAGATTAAAGTGTCAAAGAACATGAACAGCAAGAGAACATTGTTGTTTGTGGATGAGGTTCATCGTTTCAACAAGTCTCAACAAGACTCTTTTTTGCCTGTAATTGAAGATGGGAGCATCGTGTTTATTGGAGCTACAACCGAGAATCCATCATTCCATTTGATAACGCCCTTGTTGTCTCGCTGTCGAGTTCTCACCCTCAACCCTTTACAGCCTAGTCATGTTGCTAGCCTGCTTAATCGAGCTGTTGCTGACACGGGCAGGGGATTGGCTTGGAGCGTGGGTGGGGCGAGTATTGAAGTCAGCGATGATGCCATTGATTTTTTGTCCTCACATTGTGATGGCGATGCTCGTGTGGCATTAAACGCCTTGGAAATTTCTGCTGTCACTGCAGCTGCTCGAGTACCCATTAAGCAATCAGTCTGCAAAGTTGAAGAAAAAGAGCATGGAGAGAATTTAGTGGAAAATAATGGGGTTGGTTCATCCCAAGTGACCACTGTCACTTTGGATGATGCCAAGGAGGCGCTGCAATCTAAGCATCTTGCTTATGACAAAGCAGGGGAAGAACACTACAATCTCATCAGTGCCCTCCACAAATCGATGAGGGGTAGTGATGCGGATGCCTCAATTTATTGGCTGGCAAGAATGTTAGAAGGAGGTGAAGAACCTTTGTATATTGCCAGGAGACTCATCAGGTTTGCAAGTGAGGATGTTGGATTGGCTGACCCCATTGCCCTTGTGCAGGCTGTTGCTTGCTGCCAAGCTTGCCATTTTTTGGGCATGCCTGAGTGCAATGTGAATCTTGCACAATGTGTGGCTTACTTGGCTTTGGCTCCCAAATCTGTTTCTGTGTATCGAGCCATTTTGGCTGCACAGGAGGTAGTGAGGGAATCTGTTGGACAGAATGAGGGAGTGCCTCTTCATCTCAGGAATGCACCCACTAAACTAATGAAGGAACTTGGATACGGGAAGGGCTATATCTACCCACCTGACAATCCTTCCTCTTCTACACAGAACTATCTACCACCATCACTTCAAGGTTACAAGTTTCTCAATTGA 1647 0.493 MEREQLLSMGFPDDLASQALAATGGKSILKATEWILGRNKSDSQTPDENPNSSPSPSPFQPKLDRFFHFQSKPSNPPQIQKQHCDTPSLPSPPSKRLRLEAENSPHQPLSERMRPRTVDDVVGQDHLLSHKSLLRSAIDSNRLPSIILWGPPGTGKTSIAKAIVNSSSQPSSYRFVSLSAVTAGVKDVRDVVEEARKIKVSKNMNSKRTLLFVDEVHRFNKSQQDSFLPVIEDGSIVFIGATTENPSFHLITPLLSRCRVLTLNPLQPSHVASLLNRAVADTGRGLAWSVGGASIEVSDDAIDFLSSHCDGDARVALNALEISAVTAAARVPIKQSVCKVEEKEHGENLVENNGVGSSQVTTVTLDDAKEALQSKHLAYDKAGEEHYNLISALHKSMRGSDADASIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPIALVQAVACCQACHFLGMPECNVNLAQCVAYLALAPKSVSVYRAILAAQEVVRESVGQNEGVPLHLRNAPTKLMKELGYGKGYIYPPDNPSSSTQNYLPPSLQGYKFLN* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1313 548 FunFam AAA-type ATPase family protein 266 345 - -
Vvi3g1313 548 Gene3D - 477 548 - -
Vvi3g1313 548 CDD HLD_clamp_RarA 266 373 - -
Vvi3g1313 548 Gene3D - 3 56 - -
Vvi3g1313 548 MobiDBLite consensus disorder prediction 37 112 - -
Vvi3g1313 548 Pfam MgsA AAA+ ATPase C terminal 399 546 IPR021886 -
Vvi3g1313 548 FunFam Replication-associated recombination protein A 100 265 - -
Vvi3g1313 548 SUPERFAMILY post-AAA+ oligomerization domain-like 383 547 IPR008921 GO:0003677|GO:0006260
Vvi3g1313 548 Gene3D - 373 476 - -
Vvi3g1313 548 Gene3D - 95 264 IPR027417 -
Vvi3g1313 548 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 547 - -
Vvi3g1313 548 Pfam ATPase family associated with various cellular activities (AAA) 146 260 IPR003959 GO:0005524|GO:0016887
Vvi3g1313 548 CDD AAA 122 259 - -
Vvi3g1313 548 Pfam UBA/TS-N domain 4 35 IPR015940 -
Vvi3g1313 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 339 IPR027417 -
Vvi3g1313 548 Gene3D - 266 340 - -
Vvi3g1313 548 SMART AAA_5 142 266 IPR003593 GO:0016887
Vvi3g1313 548 FunFam Putative AAA family ATPase 373 476 - -
Vvi3g1313 548 MobiDBLite consensus disorder prediction 71 89 - -
Vvi3g1313 548 Pfam AAA C-terminal domain 293 398 IPR032423 -
Vvi3g1313 548 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Vvi3g1313 548 SUPERFAMILY UBA-like 4 42 IPR009060 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1313 104 321 Core DNA Replication Machinery Family AT1G77470 27.602 2.11e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1313 K07478 - vvi:100258647 1055.43