Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1309 ATGCATTCGCACGATAGACCTCTATCTGCTCAAGGGGACTCTGGGCTTGTCCTCACAACAGATCCAAAACCCCGGCTCCGTTGGACCACTGAGCTTCATGAGCGGTTCGTCGATGCCGTTGCCCAGCTTGGAGGACCAGATAAGGCCACGCCAAAGACCATCATGAGAGTTATGGGTGTTAAGGGTCTCACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTCAGACTTGGGAAGCAACCGCATAAGGATTTCAATGATCAAGCAGTTAAGGATGGAGAGAAAGCTTCAGCATTAGGTAATCAAAGAAATGCTACCCCCACGCCTGTCTTAATGGGTCGCAACATAAATGAGAACATGCACTTTAATGAAGCACTTAGGATGCAAATGGAGGTACGAAGGAGATTGAATGAACAATTAGAGGTTCAGAGACACCTCCAAATGAGGATTGATGCTCAAGGAAAGTATATGCAAACTATATTGGAGAAAGCTTGTCAAACACTTACAGGCAAAAACGGAGACTGTCAAAGCTACCATGGTGTTGGTAATCAAGGATACACCGAGGTTGGATCCATGAAAGATTTTTCTTCTTCTGTGAACTTCCCATGTCTAGAAGATTTGCACATATATGGAGAGAGGCCTAACCCATACGATAGCAGTAAAGCCCCGATAATTTGGTCCAATGATATGCAACTGCTACAAGAAGTGGGAACAGCAGCGGCATGTATTCCCTCTCAAGAGGATGCTTTCAAAAGCTACTTAAAGCAGCATCATGAAGAAGAAAGCTCAGGCTCTGGTGAAGCTTGA 807 0.4498 MHSHDRPLSAQGDSGLVLTTDPKPRLRWTTELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDQAVKDGEKASALGNQRNATPTPVLMGRNINENMHFNEALRMQMEVRRRLNEQLEVQRHLQMRIDAQGKYMQTILEKACQTLTGKNGDCQSYHGVGNQGYTEVGSMKDFSSSVNFPCLEDLHIYGERPNPYDSSKAPIIWSNDMQLLQEVGTAAACIPSQEDAFKSYLKQHHEEESSGSGEA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1309 268 Pfam MYB-CC type transfactor, LHEQLE motif 120 167 IPR025756 -
Vvi3g1309 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 23 78 IPR006447 GO:0003677
Vvi3g1309 268 Coils Coil 123 143 - -
Vvi3g1309 268 Pfam Myb-like DNA-binding domain 26 74 IPR001005 -
Vvi3g1309 268 SUPERFAMILY Homeodomain-like 22 78 IPR009057 -
Vvi3g1309 268 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g1309 268 FunFam Myb family transcription factor 22 80 - -
Vvi3g1309 268 Gene3D - 22 80 - -
Vvi3g1309 268 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 189 IPR044848 GO:0003700
Vvi3g1309 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 20 80 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1309 Vvi-Chr3 19070539 19072146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1309 5 211 G2-like Transcription Factor Family AT1G79430 63.084 1.26e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi3g1309 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1309 - - vvi:100255279 527.324