Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1300 ATGGACAAGCGTCTAAGGTTACTGTTCATTCTCTTTATCATAAGGCTCCCAACACTGGTTTTAGGGGAGTGTGCCTGTGATGAAGAGGATGAAGATCGAGACAGAGATAAAGCTCTTAGATATAAGATAGCCGCCATAGCTTCCATACTGGTTGGTGGCACAATTGGGGTGTGCATACCGATTATAGGGAAGAAGATACCGGCTCTTCAACCCGAAAAGAATGTATTCTTCGTTATAAAGGCGTTTGCAGCGGGAGTGATTCTGGCAACCGGCTTCATTCACGTACTTCCTGATGCTTTTGAGAGCTTAACTTCGCCATGTCTCAGTGAGAACCCCTGGGCCAATTTTCCATTTACCGGCTTTGTGGCCATGCTATCGGCTATCGGGACGCTGATGGTGGATAGTTTATCAACCTCTTACTATACGAGGTCTCATTTGAAGAATTCTCTGCCTGTTCTTGGAGATGAAGAAAAAGTTGGAGAGCATGAAGGTCAAGTTTATGTTCACACACATGCCACTCATGGCCATACTTCTGCTGACGAAGTGGGTTCAGACCTCATCAGGCATCGTGTGATTTCTCAGGTTTTGGAATTGGGAATCGTGGCGCATTCTGTGATCATTGGAATATCGTTAGGAGCATCAGAGAGTCCCCAAACAATAAAGCCTCTGGTGGCTGCTCTCACTTTCCACCAATTTTTCGAAGGCATGGGGCTTGGAAGTTGCATTGTTCAGGCCAAGTTCAAGTCTCGGGCTGCTACGATTATGGGGCTGTTCTTCTCCCTCACAACCCCAGTAGGGATAGGTATTGGGATCGGAATATCACAAGTTTATGATGAAAACAGTTCAACAGCCCTTATCATTGAAGGGATTTTCAATGCTGCATCGGCCGGAATCTTGATATATATGGCACTGGTTGATCTTCTAGCCGCAGATTTCATGAGCCCCAAGATGCAGACCAATGAAATGCTTAAAGTTATGGCTAATATTTCACTTCTTCTTGGTGCTGGTTGCATGTCCCTTATTGCCAAATGGGCATAA 1038 0.4547 MDKRLRLLFILFIIRLPTLVLGECACDEEDEDRDRDKALRYKIAAIASILVGGTIGVCIPIIGKKIPALQPEKNVFFVIKAFAAGVILATGFIHVLPDAFESLTSPCLSENPWANFPFTGFVAMLSAIGTLMVDSLSTSYYTRSHLKNSLPVLGDEEKVGEHEGQVYVHTHATHGHTSADEVGSDLIRHRVISQVLELGIVAHSVIIGISLGASESPQTIKPLVAALTFHQFFEGMGLGSCIVQAKFKSRAATIMGLFFSLTTPVGIGIGIGISQVYDENSSTALIIEGIFNAASAGILIYMALVDLLAADFMSPKMQTNEMLKVMANISLLLGAGCMSLIAKWA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1300 345 PANTHER ZINC/IRON TRANSPORTER 38 339 - -
Vvi3g1300 345 NCBIfam ZIP zinc/iron transport family 24 345 IPR004698 GO:0005385|GO:0016020|GO:0071577
Vvi3g1300 345 Pfam ZIP Zinc transporter 40 342 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1300 Vvi-Chr3 18936110 18937357 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1300 5 345 Inorganic Solute Cotransporters AT3G12750 55.587 1.14e-135 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1300 K14709 - vvi:100262239 632.484