Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1298 ATGGACAAGCTTCTGAGGTTACTGTTCATCCTCTTTCTCATAACTCTTCCAACACTGGTTTTAGGAGACTGTACATGTGACAAAGACGATGGAGATCGAGACAAAAATAAAGCTCTTAGATATAAGATAGCAGCTATAATTGCCATACTGGCTGGTGGTGCAATTGGGGTGTGTATACCAATTCTAGGGAAGACGATACCGGCTCTTCACCCTGAAAAGAATGTATTCTTTATTATAAAGGCGTTTGCAGCCGGAGTGATTCTGGCGACGGGGTTCATTCACGTACTTCCTGATGCTTTTGAGAACTTAACCTCGCCCTGTCTCAGTGAGAACCCTTGGGGGAATTTTCCATTTACTGGCTTTGTGGCGATGGTATCGGCCATTGGGACACTGATGGTGGATGCTTGTGCAACCTCTTACTATAGTAGGTCTCACTTCAAGAAGGCTCAGCAAGCTGTGGGAGATGAAGAGAAGGCTGGAGAGCATGAAGGTCATGTTCATGTTCACACACATGGCACTCATGGCCATGCTCACGGATCTGCATCTTCTGCTGAGGAAATGGGTTCTGCAGAACTCATCAGACATCGTGTGATTTCTCAGGTTTTGGAATTGGGAATTGTGGTGCATTCTGTAATCATTGGAATATCATTAGGAGCATCTGAGAGTCCAAAAACAATAAAGCCTCTGGTGGCTGCTCTCACCTTCCACCAATTTTTTGAAGGCATGGGCCTTGGAGGTTGCATTGTTCAGGCCAAGTTTAAGCTTCGGGCTGCTGCAATTATGGCGCTGTTCTTCTCCCTAACAACCCCAGTTGGGATAGCGATTGGGATCGGGATATCGAATGTTTATGACGAAAACAGTTCAACAGCACTCATAGTTGAAGGGATTTTCAATGCTGCATCGGCCGGAATCTTGGTATATATGGCGCTGGTGGATCTTCTAGCAGCGGATTTCATGAACCCAAGGATGCAGGGTAATGGAAGGCTTCAAGTTGGGGCCAATATTTCACTTCTCGTTGGGGCTGGTTGCATGTCCCTCCTGGCCAAATGGGCTTAA 1056 0.464 MDKLLRLLFILFLITLPTLVLGDCTCDKDDGDRDKNKALRYKIAAIIAILAGGAIGVCIPILGKTIPALHPEKNVFFIIKAFAAGVILATGFIHVLPDAFENLTSPCLSENPWGNFPFTGFVAMVSAIGTLMVDACATSYYSRSHFKKAQQAVGDEEKAGEHEGHVHVHTHGTHGHAHGSASSAEEMGSAELIRHRVISQVLELGIVVHSVIIGISLGASESPKTIKPLVAALTFHQFFEGMGLGGCIVQAKFKLRAAAIMALFFSLTTPVGIAIGIGISNVYDENSSTALIVEGIFNAASAGILVYMALVDLLAADFMNPRMQGNGRLQVGANISLLVGAGCMSLLAKWA* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1298 351 Pfam ZIP Zinc transporter 40 348 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vvi3g1298 351 PANTHER ZINC/IRON TRANSPORTER 38 345 - -
Vvi3g1298 351 NCBIfam ZIP zinc/iron transport family 24 351 IPR004698 GO:0005385|GO:0016020|GO:0071577
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1298 Vvi-Chr3 18922048 18923460 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1298 4 351 Inorganic Solute Cotransporters AT3G12750 56.461 2.27e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1298 K14709 - vvi:100255284 582.793