Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1294 ATGAGAGATATGAGAGATGAGAGAATGGAGAAGAAGAAGAAAGCAACGAAGGTGTTCTGCTACTACTACGAGAGGGAGTTTGAGGACGAGAAGATTCTTGTTCAGTACCAGAAGGCCAAGCACTTCAAGTGCCATGTCTGCAACAAGAAGCTCTCCACTGCCTTTGGCATGGCCATCCACGTCCTCCAAGTCCACAAGGAAACTTTTCATTTTCTAAGCCACCTTCAGGGACCCTTTGTTGAGGGACTCATTCGGACCTACATTGTGACCTTGGCCATCCTTTGTCCTTAG 291 0.4742 MRDMRDERMEKKKKATKVFCYYYEREFEDEKILVQYQKAKHFKCHVCNKKLSTAFGMAIHVLQVHKETFHFLSHLQGPFVEGLIRTYIVTLAILCP* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1294 96 ProSitePatterns Zinc finger C2H2 type domain signature. 44 65 IPR013087 -
Vvi3g1294 96 PANTHER ZINC FINGER PROTEIN 207 11 69 - -
Vvi3g1294 96 CDD SUF4-like 17 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1294 Vvi-Chr3 18864770 18865390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1294 10 67 C2H2 Transcription Factor Family AT1G30970 81.356 5.20e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi3g1294 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1294 - - vvi:100251787 114.39