Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1292 ATGGGGAAGAAGAAGAAGAGAGCAGCTAAGGTGTTCTGCTACTACTATGAGAGGGAGTTCGAGGATGAGAAGATTCTTCTTCAGCACCAGAAGGCCAAGCACTTCAAGTGCCATGTTTGCAACAAGAAGCTCTCCACTGCCTTTAGCATGGCCATCCACATCCTCCAGGTCCACAAGGAGACCGTCTCCAAGTACTATTGCTTGTCATTTGCATTTTTTTTTTAA 225 0.4578 MGKKKKRAAKVFCYYYEREFEDEKILLQHQKAKHFKCHVCNKKLSTAFSMAIHILQVHKETVSKYYCLSFAFFF* 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1292 74 Gene3D Classic Zinc Finger 1 65 - -
Vvi3g1292 74 PANTHER ZINC FINGER PROTEIN 207 1 64 - -
Vvi3g1292 74 CDD SUF4-like 10 65 - -
Vvi3g1292 74 ProSitePatterns Zinc finger C2H2 type domain signature. 37 58 IPR013087 -
Vvi3g1292 74 ProSiteProfiles Zinc finger BED-type profile. 6 65 IPR003656 GO:0003677
Vvi3g1292 74 SUPERFAMILY beta-beta-alpha zinc fingers 11 60 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1292 Vvi-Chr3 18807696 18807920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1292 1 64 C2H2 Transcription Factor Family AT1G30970 78.462 2.39e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi3g1292 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1292 - - vvi:100251787 126.331