Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1269 ATGAGTCTCAAAGCCATCTCTCTCCCCCTTCTCTTTGCCATATTTGCATCTTTGGCCATGTACACGCATCTCTCTCTTCCAAACAACCCTAAATTTGTTAAACACCTCATTGATCTTAGCCTCAAAACCTTCTCATCATCACCCTTTGTTTCAACTCCCATGGTGTACTCCGCCCTAGACTGCGGCCTCCACCGCCATAAACATCACCAGGACAGCACCACAGGATCCCTTTGCGACGATTTTCCGCCAGATTTCCCCCCTCCAGACACCAACACTACCTCAATTTTATGCGTCGATCGCAACGGTTGCTGCAACTTCACTATGGTGCAGTCTGCAGTCGATGCAGTCAGTGTTCTTAGCCAGAAAAGAACCATAATATGGATCAACTCTGGAGTTTACTATGAAAAGGTCATTATTCCAAAAAACAAGCCAAACATCACATTTCAAGGACAAGGGTTTGCTTCAACTGCAATTGTGTGGAATGACACAGCCAATTCTTCACATGGCACATTTTACAGTGGCTCAGTTCAAGTTTTTGCTGCCAACTTCATTGCTAAGAACATTAGCTTCATGAATGTAGCTCCAATTCCGAAGCCAGGTGATGTTGGAGCACAGGCAGTGGCCATTAGGGTGGCAGGAGACCAGGCGGCGTTCTGGGGTTGTGGGTTCTTTGGATCCCAAGACACGCTTCATGACGACAGGGGTCGACATTACTTCAGGGACTGCTACATCCAGGGTTCCATTGATTTTATTTTCGGAGATGCAAGGTCATTCTACGAGAACTGCCAGTTGATTTCCATGGCTAACCCAGTGCCAGTAGGATCAAAGGTGATAAATGGTGCAATCACAGCACACGGCAGAACTTCCATGGACGAGAACACCGGGTATGCATTTGTGGCCTGCACTGTGGGTGGGACTGGAAGAGTGTGGCTTGGTCGAGCATGGAGGCCCTTTTCTCGTGTTGTTTTTGCTTACACATCCTTGTCTGATATCATCGCCTCTGAGGGTTGGAATGACTTCAATGACCCGACCAGAGACCAGAGTATTTTTTATGGGGAGTACATGTGCAAAGGTCCAGGAGCCAATACAAGTACGAGGGTGCCTTATGCTCAGAAACTCAATGACACACAAGCTTCTATCTTTCTTAATGTGTCTTTCATTGATGCAGACCAATGGTTACAACCTTATGCATAA 1194 0.4682 MSLKAISLPLLFAIFASLAMYTHLSLPNNPKFVKHLIDLSLKTFSSSPFVSTPMVYSALDCGLHRHKHHQDSTTGSLCDDFPPDFPPPDTNTTSILCVDRNGCCNFTMVQSAVDAVSVLSQKRTIIWINSGVYYEKVIIPKNKPNITFQGQGFASTAIVWNDTANSSHGTFYSGSVQVFAANFIAKNISFMNVAPIPKPGDVGAQAVAIRVAGDQAAFWGCGFFGSQDTLHDDRGRHYFRDCYIQGSIDFIFGDARSFYENCQLISMANPVPVGSKVINGAITAHGRTSMDENTGYAFVACTVGGTGRVWLGRAWRPFSRVVFAYTSLSDIIASEGWNDFNDPTRDQSIFYGEYMCKGPGANTSTRVPYAQKLNDTQASIFLNVSFIDADQWLQPYA* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1269 397 Pfam Pectinesterase 98 389 IPR000070 GO:0030599|GO:0042545
Vvi3g1269 397 Gene3D - 94 397 IPR012334 -
Vvi3g1269 397 ProSitePatterns Pectinesterase signature 2. 244 253 IPR033131 -
Vvi3g1269 397 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 84 394 - -
Vvi3g1269 397 SUPERFAMILY Pectin lyase-like 95 396 IPR011050 -
Vvi3g1269 397 FunFam Pectinesterase 90 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1269 Vvi-Chr3 18407105 18409640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1269 76 394 Carbohydrate Esterase AT1G05310 72.414 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1269 - - vvi:100241515 809.29