Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1256 ATGGAGATTGATCTCGAACTGCCTTCAGGCCAAGACGACAAATTCAACACTGGATCAAAGATGAATAATGATATTGTTGATGTCCCTGATGGAATTCATGTTGGTGAAGATGTTCATGCTCCTACAATAGGTGAACAAATTAAGGAAAACCTTGGAGAGAATGTGGGTGAAGATGTTATTGGTGGTGGGGATCAAGTAGATGTGAACACACTTGGAGCAGTTAGCGGGGCCATAAATTATGAGCCCCAAAATGGTTTGGAATTTGAATCAAAGGAGGCAGCATATTCTTTTTACAGAGAATATGCTAGGTCTGTGGGGTTTGGTATCACAATAAAAGCCAGTCGCCGTTCAAAACGATCCGGGAAATTCATTGATGTAAAAATTGCATGTTCTAGATTTGGAAGCAAGCGGGAGTCCAGTACAACTGTTAATCAACGATCATGTCCAAAAACAGACTGCAAGGCTAGCATGCATATGAAGAGAAGGCAAGATGGAAAATGGACTATATATAGTTTTGTAAAAGAGCACAACCATGAAATTTGTCCAGATGATTTTTATTATGCTATCAGGGGGCGGAACAAGCAATCTGGTGTGGTTGCTCTTCAGAAGAAAGGACTGCAGTTGGCTTTAGAAGGGGAAGATGTAAAGATGTTGCTTGAGCATTTTATCCGCATGCAAGATGAGAGTCCCAACTTTTATTATGCTATTGATTTGGACCATGAAAAACGTTTGAGAAATGTTTTCTGGGTTGATGCAAAGGGTAGGCATGATTATAGTAATTTCTGCGATGTAGTCTTCTTTGATACTTCTTATGTTAGAGACAAATACAGAATCCCCTTAGTTCCTATTGTTGGAGTGAATAATCATTTCCAGTTCATTATGTTTGGATGTGCATTAATTGGGGATGAGTGTGCATCAAGTTTTGTTTGGTTAATGCGGACATGGCTTAAAGCAATGGGTGGTGAAGCTCCAGATGTGATTATTACTGATCAAGAAAAATCGTTGAAAGAAGCTATCCCAGAAGTGTTTCCTGATGCACACCATTGTTTTTGTGTGTGGCATATATTGAGAAAGATTCCTGAATATTTAAGTGGTATTATGAATCAGTATGAAAGTTTTATGGAAAATTTTAACAAATGCATTTCTCGTTCTTGGACAGAAGAACAGTTTGAAAAGAGATGGTGGAAAATGCTTGATAAATTTGGACTTAAGGAGGATCCAAGGTTTCGATTATTGTATGAAGATCGCCAAAAGTGGGTCCCAGCTTATCTAGGGAAAATTTGTTTAGCTGGTATATCTAGGAATGACCTATATGGAAGTATAACCTCTTTCTTGGACAAGTATGTGCATAAAGATACTACATTTAAGGAGTTTTTGGTGCAATACAAAGCATTTTCTCAAGACAGGTATGAAATGGAAGCTAAAGCTGATTATGAAACACAACAGAAGCAACCAACCTTAAGATCTTTGTCACCTTTTGAGAAACAAATGTCAACAATTTATACACATGAAGTGTTCAAAAAGTTCCAGGCTGAGGTTTTGGGAGTGGTTGGGTGTCAATTGCAGAAAGAACGTGAAAATGAGGGAACCATGATATTTCAAGTTGATGATTTTGAAGAACGTCAGGATTTCATTGTAGCTTGGAATAAAACAGATTCAAATATTTGTTGTTTGTGTCGTTCATTTGAATACAAAGGTTTCCTTTGTAGACACGCATTGCTTATTCTTCAAATATCTGGTGTATCCAACATCCCATCTCACTATATATTGAAGCGTTGGACAAAAGATGCAAAGATCGGGCGAACTACAGGTGAAGTATCTAATGGGCTTCAATATCGGGTGCAACGTTTCAATGATCTATGTAAACGGGCTATTAAATTGAGTGAAGAAGGGTCTTTATCTCAAGAAACCTTTGATATTGCAATTGAGGCATTAGACGAAGCCTTGAAACATTGTGTCGGTGTGAACAATTCTATTACGAGTGTTTTAGAGCCCAATATGTTGGCTATTCACGGTTTTCTTGATATTGAAGTAGAGAATCACTCAAACAATACGACCAAGGCATCTAAGAAAAAGAAGGCATATAAAAAAAGAAAGGTACGTTCTGATTCAGAGGGACTAACTATCGGGATGCAAGACAGCTGCCAGCAGATGGAACAGTTGGACTCAAGAATGCACACCCTTGATAATTGTTATGTTCCTCAACAGGACATGCAAGGGATGGAACTCGGCTCTAGAGAACCAAGTCTTGATGGCTATTATAGTGCTCAACAAAATATGCAAGGAATGGGACAATTGAACTCAATACCACCTATTCGTGATGGCTATTTTAGCAATCAACAAGGCATGCAGGGGCTGGGACAACTAAATTCAATACAAACACGTGTGAGCCATTATGGGGCCCAACAGAGCATGCAGGGACTGTTGCAGGGACAGCTTAGTTTCAGAGCACCAGCCATGCAGGGTTGTTTTGACATTCAGGACAGTCTGCAAGATATGGAACAATCCGTAGGTTCCTCACAATTTCATGGCATTGTGACAAAACATCTGCATGGCAAACACCTCTCTCGGTAG 2574 0.392 MEIDLELPSGQDDKFNTGSKMNNDIVDVPDGIHVGEDVHAPTIGEQIKENLGENVGEDVIGGGDQVDVNTLGAVSGAINYEPQNGLEFESKEAAYSFYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGSKRESSTTVNQRSCPKTDCKASMHMKRRQDGKWTIYSFVKEHNHEICPDDFYYAIRGRNKQSGVVALQKKGLQLALEGEDVKMLLEHFIRMQDESPNFYYAIDLDHEKRLRNVFWVDAKGRHDYSNFCDVVFFDTSYVRDKYRIPLVPIVGVNNHFQFIMFGCALIGDECASSFVWLMRTWLKAMGGEAPDVIITDQEKSLKEAIPEVFPDAHHCFCVWHILRKIPEYLSGIMNQYESFMENFNKCISRSWTEEQFEKRWWKMLDKFGLKEDPRFRLLYEDRQKWVPAYLGKICLAGISRNDLYGSITSFLDKYVHKDTTFKEFLVQYKAFSQDRYEMEAKADYETQQKQPTLRSLSPFEKQMSTIYTHEVFKKFQAEVLGVVGCQLQKERENEGTMIFQVDDFEERQDFIVAWNKTDSNICCLCRSFEYKGFLCRHALLILQISGVSNIPSHYILKRWTKDAKIGRTTGEVSNGLQYRVQRFNDLCKRAIKLSEEGSLSQETFDIAIEALDEALKHCVGVNNSITSVLEPNMLAIHGFLDIEVENHSNNTTKASKKKKAYKKRKVRSDSEGLTIGMQDSCQQMEQLDSRMHTLDNCYVPQQDMQGMELGSREPSLDGYYSAQQNMQGMGQLNSIPPIRDGYFSNQQGMQGLGQLNSIQTRVSHYGAQQSMQGLLQGQLSFRAPAMQGCFDIQDSLQDMEQSVGSSQFHGIVTKHLHGKHLSR* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1256 857 ProSiteProfiles Zinc finger SWIM-type profile. 544 580 IPR007527 GO:0008270
Vvi3g1256 857 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g1256 857 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 79 653 IPR031052 GO:0006355
Vvi3g1256 857 Pfam SWIM zinc finger 553 576 IPR007527 GO:0008270
Vvi3g1256 857 Pfam FAR1 DNA-binding domain 96 181 IPR004330 -
Vvi3g1256 857 SMART 26again6 555 582 IPR006564 GO:0008270
Vvi3g1256 857 Pfam MULE transposase domain 264 357 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1256 Vvi-Chr3 18007128 18010382 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi3g1256 MULE 2.4e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1256 - - vvi:100262225 1723.37