Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1254 ATGATAATAAATGCGAGGAATCAAAATGCGGTTAGTAATGCTGTGGATTGTCAGGAAAATGTGAATAGTATTGGAGTGGGCAGAAATATGGTTGATGCTGTAGATGGAGGGCATGATAGGGATGGAAAGATTCTTAATTCCCCTAAAATGGATGTTATACGGGCTGAAGGGGACACTGATTTTGAGCCACGTAATGGCATTGAATTTGAATCACACGAGGCAGCATATTCATTTTATCAAGAGTATGCCAAGTCTATGGGATTCACCACCTCGATAAAAAACAGTCGGCGCTCAAAGAAATCAAAAGAATTTATTGATGCCAAATTTGCATGTTCTAGATATGGGGTCACTCCAGAATCAGATAGTGGTAGTAGTAGCCGACGGCCAAGTGTAAAGAAGACAGACTGCAAAGCCAGCATGCATGTGAAGAGAAGGCTAGATGGGAAATGGGTAATTCATGAGTTTATAAAGGAGCATAATCATGAGCTTTTACCAGCTCTAGCATATCATTTTCGAATTCATAGGAATGTAAAGTTAGCTGAAAAGAATAATATTGACATTTTACAAGCTGTAAGTGAACGGACAAGAAAGATGTATGTTGAAATGTCTAGACAATGTGGTGGGTATCGAGATGTTGGGTTTCTTAGGAATGAAATACCTTCTCAGTTTGATAAAGGGCGGTACCTGGCTCTAGATGAGGGGGATGCCCAAGTCATACTTGAGTATTTTAAGCACATCCAGAAGGATAATCCTAACTTCTTCTATGCATTAGACCTGAATGAAGAGCAGCGCCTAAGAAATTTGTTTTGGGTTGATGCCAAAAGTAGGAATGACTACATCCATTTCAGTGATGTTGTATCATTTGATACTACTTATGTAAAAAGCAACGATAAAATGCCATTTGCGCTTTTTATTGGGGCAAACCATCACTTCCAATCCATGTTGCTTGGATGTGCGTTGATTGCGGATGAGACCAAACCAACATTCGTTTGGTTAATGAAAACTTGGCTTAGAGCAATGGGTGGGCAGGCTCCTAAAGTGATAATAACTGATCAAGACAGAACTTTGAAGGCAGCTACTGAAGAAGTCTTTCCAAATGCACGTCATTGCTTTGCTCTTTGGCATGTATTGGAAAAAATCCCTGAAGTTCTCACTCCTGTAATCAAACGACATGAAAATTTTATGGCAAAATTCAACAAGTGCATTTTTAAGTCATGGACAGATGAACAGTTTGATATGAGATGGTGGAAAATGGTCAGTAGGTTTGAACTTCAAGAGGATGGATGGTTTCAGTTTTTATATGAAGATCGTAAAAAGTGGGTACCAACTTTTATGGGGGATACTTTTTTGGCAGGCATGTCTACAGCTCAGCGCTCTGAAAGTATAAACTCTTTCTTCGACAAATACATTCATAAGAAAATTACCCTGAAAGAGTTTGTGAAGCAGTATGGATTAATTCTACAAAATAGGTATGAAGAGGAAGCAATAGCAGATTTCGATACATGGCACAAACAGCCTGCATTGAAATCTCCTTCACCCTGGGAAAAACAGATGTCAACTGTTTACACACATGCAATATTCAAGAAATTCCAAGTTGAGGTTTTGGGTGTAGTTGGGTGCCATCCCAGCAGAGAAATTGAAGATGGAGCGAATATGACATTTAGAGTTGTGGACTGTGAAAAGAACGAAACTTTTATGGTGTCATGGAAAGAAGTGAAGGCAGAGGTTTCTTGTTTATGTCGTTCTTTTGAATACAAAGGCTTTCTTTGTAGACATGCAATGATTGTTCTCCAAATTTGTGGCCTTTCTAGTATCCCAACTCAGTATATTCTAAAGAGGTGGACAAAAGATGCAAAGAACCAGCCATCAACAGTTGAAGGAACGGAACGCATACAAACTAGGGTGCAACGTTACAATGATTTATGTAAACGAGCCATTGAGTTGGGTGAAGAAGGATCTTTGTCTCAAGAGAGCTACAGTATTGCATTCCGAACGCTGGTAGAAGCCCTGAAAAATTGTGTGAATGTGAATAATTCAAATAAAAGTGCTGTAGAATTTATCAGCAATGCTCATGGTCCTCGTGACATGGAAGAAGAGAATCAGGGAAGCCTTGGAACCAAAACAAGTAAGAAGAAGATGGCAAGCAGGAAAAGGAAGGGACAATCAGAGCCTGGTGTTATAATTCCTGAGGCACAAGATAGCTTGCAGCAAATGGGAAATCTAAGCTCAGATGGAATAACTCTTAATGGCTTTTATGGATCCCAACAGAATGTGCAAGGACTGGTGCAATTGAACTTAATGGAGCCTCCTCATGATGGTTACTATGTTAATCAGCAGGGCATGCAGGGGCTGGGACAACTAAATGCAGTAGCACCCAATCATGACGGGTTCTTTGGGACTCAACCAAGCATGCATGGCCTGGGGCATCTGGATTTTCGACCACCAACTAGCTTTGGTTACAGCATGCAGGATGAGCACAGCCTGAGATCCACACAGTTGCATGGAGATGCTTCAAGACATGCATGA 2526 0.405 MIINARNQNAVSNAVDCQENVNSIGVGRNMVDAVDGGHDRDGKILNSPKMDVIRAEGDTDFEPRNGIEFESHEAAYSFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDSGSSSRRPSVKKTDCKASMHVKRRLDGKWVIHEFIKEHNHELLPALAYHFRIHRNVKLAEKNNIDILQAVSERTRKMYVEMSRQCGGYRDVGFLRNEIPSQFDKGRYLALDEGDAQVILEYFKHIQKDNPNFFYALDLNEEQRLRNLFWVDAKSRNDYIHFSDVVSFDTTYVKSNDKMPFALFIGANHHFQSMLLGCALIADETKPTFVWLMKTWLRAMGGQAPKVIITDQDRTLKAATEEVFPNARHCFALWHVLEKIPEVLTPVIKRHENFMAKFNKCIFKSWTDEQFDMRWWKMVSRFELQEDGWFQFLYEDRKKWVPTFMGDTFLAGMSTAQRSESINSFFDKYIHKKITLKEFVKQYGLILQNRYEEEAIADFDTWHKQPALKSPSPWEKQMSTVYTHAIFKKFQVEVLGVVGCHPSREIEDGANMTFRVVDCEKNETFMVSWKEVKAEVSCLCRSFEYKGFLCRHAMIVLQICGLSSIPTQYILKRWTKDAKNQPSTVEGTERIQTRVQRYNDLCKRAIELGEEGSLSQESYSIAFRTLVEALKNCVNVNNSNKSAVEFISNAHGPRDMEEENQGSLGTKTSKKKMASRKRKGQSEPGVIIPEAQDSLQQMGNLSSDGITLNGFYGSQQNVQGLVQLNLMEPPHDGYYVNQQGMQGLGQLNAVAPNHDGFFGTQPSMHGLGHLDFRPPTSFGYSMQDEHSLRSTQLHGDASRHA* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1254 841 MobiDBLite consensus disorder prediction 690 728 - -
Vvi3g1254 841 MobiDBLite consensus disorder prediction 691 705 - -
Vvi3g1254 841 SMART 26again6 576 603 IPR006564 GO:0008270
Vvi3g1254 841 MobiDBLite consensus disorder prediction 115 137 - -
Vvi3g1254 841 MobiDBLite consensus disorder prediction 821 841 - -
Vvi3g1254 841 Pfam SWIM zinc finger 573 598 IPR007527 GO:0008270
Vvi3g1254 841 ProSiteProfiles Zinc finger SWIM-type profile. 563 601 IPR007527 GO:0008270
Vvi3g1254 841 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 53 675 IPR031052 GO:0006355
Vvi3g1254 841 Pfam MULE transposase domain 285 378 IPR018289 -
Vvi3g1254 841 Pfam FAR1 DNA-binding domain 77 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1254 Vvi-Chr3 17992651 17996429 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi3g1254 MULE 4.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1254 - - vvi:100251986 1675.99