Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1251 ATGGATATAGATCTTAGATTACCTTCTGGTGAACATGATAAGGAAGATGAAGAAACAAATGGAATTGATACTATGTTGAATGGTGAAGACAAACTACATCATGGAGATGGAGAGACTGGAACTATGGTGGACGTTGGAGGTGAGGTACATGGTGAAGATGGAGGGGACATGAATTCTCTCAATGCAGATCTTGTAGTGTTTAAAGAGGATACGAATCTTGAGCCACTTTCTGGTATGGAATTTGAATCACATGGTGAGGCCTATTCTTTTTATCAAGAATATGCTAGGTCTATGGGATTCAGCACTGCAATACAAAATAGCCGTCGTTCAAAGACATCAAGGGAATTTATTGATGCAAAATTTGCCTGTTCTAGATATGGGACCAAGCGAGAGTATGACAAATCTTATAATCGACCACGTGCCAGACAAAACAAGCAAGACCCAGAAAATGCAACAGGTCGACGATCATGTGCAAAGACAGACTGCAAAGCAAGCATGCATGTTAAGAGGAGATCAGATGGAAAATGGGTTATACACAGTTTTGTGAAGGAGCATAACCATGAACTCTTACCAGCTCAAGCAGTCAGTGAACAAACGAGAAAGATGTATGCGGCGATGGCTAGACAATTCGCTGAATATAAGAGTGTGGTTGGTCTCAAGAATGACTCCAAAAGTCCATTTGATAAGAGTCGGAATCTGGCACTAGAACCAGGAGATGCAAAAGTTTTGCTCGAATTTTTTACACAGATGCAGCATGTAAATTCCAACTTCTTTTATGCAATAGATCTGGCTGAAGATCAACGTCTGAAAAATCTGTTCTGGGTTGATGCCAAAAGCAGGCATGATTATATCAATTTCTCTGATGTCGTTTCTTTTGACACTACCTATATTAGGAATAAGTATAAAATGCCTCTTGCTCTTTTTATTGGAGTGAATCAACATTATCAATTTGTGTTGCTTGGATGTGCGTTAATATCAGATGAGAGCGCAGCAACATTTTCTTGGTTAATGCAGACATGGCTGAAGGCAATGGGTGGACAATCTCCCAAAGTAATAATTACTGACCAAGACAAAGGCATGAAATCAGCTATTTCGGAGGTTTTTCCAAATGCTTATCATGCCTTTTTCTTGTGGCACATTTTGGGGAAGGTTTCTGAAAGTCTTGGGCAGGTTATTAAACAGCATGAAAATTTTATGGCAAAATTTGAAAAATGCATTTACAGGTCATGGACAGAGGAAGAGTTTGAAAACAGATGGTGTAAAATTCTTGATAGATTTGAACTCAAAGAGGATGAATGGATGCAGTCGTTGTATGAAGATCGTAAACAATGGGTGCCAACCTTCATGAAGGATGCCTTTTTAGCTGGAATGTCTACAGTTCAGCGATCTGAAAGTGTTAATGCTTTCTTTGACAAATACGTGCATAAGAAAACTACAGTGCAAGAGTTTGTGAAACTCTATGAAGCAATTCTACAAGATAGATATGAGGACGAAGCCAAAGCAGATTCTGATACTTGGAACAAACAACCTGCTTTAAAATCTCCATCGCCTTTGGAGAAGCATATGTCAAGGTTGTACACACATGCAGTATTTAAGAAATTCCAAGGTGAGGTTTTGGGTGCGGTTGCTTGTCATCCTAAAAGAGAAAGACAAGACGACACAACCATAACTTTCAGAGTTCAAGATTTTGAGAAGAATCAAGACTTCATTGTAACATGGAATGATATGAAGTCGGAAGTTTCTTGTATATGCCGGTTATTTGAATATAAAGGTTTTCTTTGTAGACATGCAATGATAGTTCTCCAAATTTGTGGCCTTTCAGACATTCCATCTCAATATATCCTGAAACGTTGGACGAAAGATGCAAAGAGCAGGCACTTACTGGGAGAAGAATCTGAACAGGTGCAATCTAGGTCGCAGCGATACAATGACTTATGTCAACGAGCTATGAAATTGGGTGAAGAGGGATCATTATCCCAAGAGAGTTATGATATTGCATTCCGTGTGCTAGAAGAAGCTTTTGTAAATTGTGTTAATGTGAATAACTCTAGTAAGAGTCTTATAGAAGCTGGCACATCAGGCGCTCATGGGCTCCTCTGCATTGAAGATGATAACCAAAGTAGAAATATGAGCAAGACAAATAAGAAAAAGAATCCAACCAAGAAAAGAAAGGTACCCACTGAGCCAGAAGTTTTGGCTGTTGCAGCGTCAGACAGCTTGCAACAAATGGACAAATTAAATTCTAGAGCAGTAACCCTTGACAGCTACTATGGTGCGCAACAGAGTGTCCAAGGAATGGTACAACTTAACTTAATGGCACCTAATCGTGACAATTACTATGGGAATCAGCAGACAATTCAGGGCCTGGGGCAACTAAACTCAATAGCACCAAGTCATGATGGTTATTATGGCGCTCAGCAAAGCATTCATGGACTGGGGCAGATGGATTTTTTCCGAACACCAACTAGTTTTGCTTATGCCATTCGGGATGAGCCTAATGTGAGATCCGCGCAGTTGCACGATGATGCACCAAGACATGCATGA 2544 0.3998 MDIDLRLPSGEHDKEDEETNGIDTMLNGEDKLHHGDGETGTMVDVGGEVHGEDGGDMNSLNADLVVFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFSTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSYNRPRARQNKQDPENATGRRSCAKTDCKASMHVKRRSDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAAMARQFAEYKSVVGLKNDSKSPFDKSRNLALEPGDAKVLLEFFTQMQHVNSNFFYAIDLAEDQRLKNLFWVDAKSRHDYINFSDVVSFDTTYIRNKYKMPLALFIGVNQHYQFVLLGCALISDESAATFSWLMQTWLKAMGGQSPKVIITDQDKGMKSAISEVFPNAYHAFFLWHILGKVSESLGQVIKQHENFMAKFEKCIYRSWTEEEFENRWCKILDRFELKEDEWMQSLYEDRKQWVPTFMKDAFLAGMSTVQRSESVNAFFDKYVHKKTTVQEFVKLYEAILQDRYEDEAKADSDTWNKQPALKSPSPLEKHMSRLYTHAVFKKFQGEVLGAVACHPKRERQDDTTITFRVQDFEKNQDFIVTWNDMKSEVSCICRLFEYKGFLCRHAMIVLQICGLSDIPSQYILKRWTKDAKSRHLLGEESEQVQSRSQRYNDLCQRAMKLGEEGSLSQESYDIAFRVLEEAFVNCVNVNNSSKSLIEAGTSGAHGLLCIEDDNQSRNMSKTNKKKNPTKKRKVPTEPEVLAVAASDSLQQMDKLNSRAVTLDSYYGAQQSVQGMVQLNLMAPNRDNYYGNQQTIQGLGQLNSIAPSHDGYYGAQQSIHGLGQMDFFRTPTSFAYAIRDEPNVRSAQLHDDAPRHA* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1251 847 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g1251 847 Pfam MULE transposase domain 289 381 IPR018289 -
Vvi3g1251 847 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Vvi3g1251 847 MobiDBLite consensus disorder prediction 132 157 - -
Vvi3g1251 847 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 69 678 IPR031052 GO:0006355
Vvi3g1251 847 SMART 26again6 580 607 IPR006564 GO:0008270
Vvi3g1251 847 MobiDBLite consensus disorder prediction 1 22 - -
Vvi3g1251 847 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Vvi3g1251 847 Pfam SWIM zinc finger 578 602 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1251 Vvi-Chr3 17963013 17966234 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi3g1251 FAR1 4.5e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1251 - - vvi:100258744 1699.1