Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1240 ATGCTTCAAAGCTTAGTCCCTCAATCTCCAATCGGTTCAAACCCTAACCCTAATTCTACTTCTTCTGTTGCCATGAAGACGAAGAGAGTTGAGCGTGAGCATCTTGCCGGAGCGGAGTCCTCCGGCGACCGCGAAGACGAGCAGCAGCCGTTGAAGCGACCAAATGTGTCCGGCGAGGCCGTGGTTGAAGTGGAGGAGCCGGTGGAGGAGGCGGAGTCGAGCGGCCTGAGGCTGTTAGGGCTGTTGCTACAATGCGCCGAGTGCGTCGCCATGGACAATCTGGATGACGCGAGTGATCTTTTACCAGAGATTTCAGAACTGTCGTCACCGTTCGGGTCGTCGCCGGAGCGAGTTGCAGCGTACTTCGCGGACGCGCTTCAGGCGCGTATAATCAGCTCGTGCCTTGGTACCTACTCGCCTCTCGCCATCAAAGCCCTAACGCTGTCGCAGAACCAGAGGATCTGCAACGCTCTCCAATCCTATAATTCGATCAGTCCATTGATCAAATTCTCACACTTCACCGCCAATCAAGCCATTTTCCAAGCTCTGGACGGCGAGGATCGTGTCCACGTCATCGATCTCGACATCATGCAGGGCCTCCAATGGCCAGGATTGTTCCACATCCTCGCCTCCCGGTCCAGGAAAATCAAGTCCGTACGAGTCACCGGCGTCGGATCCTCCATCGAGCTCCTCGAGGCCACCGGTCGGCGACTTGCCGACTTCGCGAGTTCTCTTGGTCTACCCTTCGAGTTCCACGCGCTGGAAGGCAAAGTCGGCAACATCACCGATCCGAGTCAACTCGGTGTTCGGCCGAGCGAAGCCACAGTAGTGCACTGGATGCACCATTGTCTGTACGACATCACCGGCAGCGATTTAGGGACGTTGAGATTGTTGACTTTGCTGCGACCAAAATTGATCACGATCGTTGAACAAGATCTCAGCCACGGTGGCAGTTTCCTCGGGAGGTTCGTTGAGGCCCTGCATTATTACTCGGCGTTGTTCGACGCCTTGGGGGACGGATTGGGTGTGGACAGCCTAGAGAGGCATACGGTGGAGCAGCAGTTGCTCGGGTCCGAGATCAGGAACATCGTGGCCGTTGGTGGGCCCAAGCGGACGGGTGAGGTCAAGGTGGACCGGTGGGGGGACGAGTTGAGTCGAATCGGGTTTCGCCCTGTCTCACTCGGCGGCAACCCGGCTGCTCAGGCGAGTTTGCTACTCGGAATGTTTCCATGGAAGGGCTACACATTGGTAGAAGAAAACGGAAGCCTAAAGTTGGGTTGGAAAGATTTATCATTGCTCACTGCTTCTGCATGGCAACCATCGGATTAG 1329 0.5621 MLQSLVPQSPIGSNPNPNSTSSVAMKTKRVEREHLAGAESSGDREDEQQPLKRPNVSGEAVVEVEEPVEEAESSGLRLLGLLLQCAECVAMDNLDDASDLLPEISELSSPFGSSPERVAAYFADALQARIISSCLGTYSPLAIKALTLSQNQRICNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDIMQGLQWPGLFHILASRSRKIKSVRVTGVGSSIELLEATGRRLADFASSLGLPFEFHALEGKVGNITDPSQLGVRPSEATVVHWMHHCLYDITGSDLGTLRLLTLLRPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDGLGVDSLERHTVEQQLLGSEIRNIVAVGGPKRTGEVKVDRWGDELSRIGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGSLKLGWKDLSLLTASAWQPSD* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1240 442 MobiDBLite consensus disorder prediction 26 52 - -
Vvi3g1240 442 ProSiteProfiles GRAS family profile. 69 439 IPR005202 -
Vvi3g1240 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 434 IPR005202 -
Vvi3g1240 442 MobiDBLite consensus disorder prediction 1 25 - -
Vvi3g1240 442 MobiDBLite consensus disorder prediction 1 62 - -
Vvi3g1240 442 Pfam GRAS domain family 80 439 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1240 Vvi-Chr3 17798581 17799909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1240 25 442 GRAS Transcription Factor Family AT5G41920 66.194 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi3g1240 GRAS 4.4e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1240 - - vvi:100854772 823.157