Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1228 ATGATGCCGCCGCGTTTCAATATAACTCTTTTGTTTCTTTGCATGCTTGGGTTGCTGAGGTGCCTAACCCTTAGCCCTGCCGCTGCTCTCACTTACTTAAACAATTCCTGTCCACAGACTCCAAACACAACTGCTGCTATCAGCCCAAATACCACCTACCAAACCAATCTCAATTTGCTTCTCTCCTTTCTTTCTTCAAATGCTACCATCGACTCCGGATTCTACAACGCCACCGTGGGGCGGGAACCTTCCGATGTAGTTTACGGTCTTTTTCTCTGCCGAGGTGATCTTAGCCCTCAACTCTGTCAAGAGTGTGTGGGGGCTGCCACTAACAAGTCACGCGACCAGTGTCAGGGAATAAAGGCGGCTGTTATTTGGTATGACGAGTGCATATTGCATTACTCAAATCAGTCCATCTTCTCCACACTCATAGAAGAGCCGATACTGATGATGCGCAACACGGTGAATCTCACAGACCCAGATGGATTCAATCGGACACTGCAAGGTATAATGGACAGCATAAGAACTCAAGCTGTGAATGATCGATCTGGCAAGAAGTACTATGCCACCAAAGAAGAAAATTACTTAGCGCCACAAATGGTACAAAGGGTGTATAGCCTGGTGCAATGCACACCAGATTTATCCGCCACCCAGTGCAATCTATGTCTTTTGGGAGTGGAAGACTATCTTCAAGAATGCTGCAGTGCACGTCAAGGGGCAAGGGTCGTGTTTCCAAGCTGTAGTTTTAGATATGAATTTTATCCTTTCTACACAGCTGAGGCAGGGGCCGAAGCACCAGCTCCTACACCTCTGCTTCTTCCTCCTGCTCCACCTTCACAACCCACCACTGAAGGAAAAGGTGGAATATCTTCACAAACAATTATCACCATTGTTGTTCCAACAGTTGTCTCTGTGGGGATCTTTTATATTTTATGCTACTGCTTCATAAGCAGGAAAGCAAGGAAGAAATACAATACAGAAGAGGAAAATGTGGAGAATGATATCACGACCGTGCAGTCATTGCAATTTGATTTTGGTACACTTCAAGCTGCTACAAATAACTTCTCTGATGATAACAAGATTGGTCAAGGTGGATTTGGTGATGTATACAAGGGTACACTTTCTAGTGGTCAAGAAATTGCTATAAAGAGGCTATCTAGAAGTTCAGTGCAAGGTGCAGTAGAATTCAAGAATGAGATTGTGTTGGTAGCCAAGCTTCAACACAGAAACCTAGTGAGGTTATTGGGATTTTGCTTGGAAGGGGAAGAGAAGATACTTGTCTATGAATATGTGCCCAACAAAAGCCTTGACTGCTTTGTGTTTGATCCTGATAAACAAGGACAACTGGATTGGTCAAGACGGTATAATATTATTGGAGGAATAGCTCGAGGGGTTCTTTATCTTCATGAAGATTCTCGGCTCAGAGTTATACACCGTGATCTAAAAGCCAGCAATGTTTTGTTAGATGGTGATATGAACCCAAAAATTTCGGATTTTGGCATGGCAAGGATTGTTGGAGTAGATCAAACTCAAGGAAATACCAACAGAGTTGTTGGCACATATGGCTACATGTCTCCTGAGTATGCAATGCGTGGACACTTCTCTGCTAAGTCAGATGTATACAGTTTTGGTGTCCTCGTTTTGGAGATAATAAGTGGCAAGAAGAACGGTAGCTTCTATGAATCAGGCCAAACTGAGGGCCTTCCAAGCTATGCATGGAAACTTTGGAGGGATGGTACACCCCTGGAATTGATGGACCCAATGATGGGGGACTCTTACGCAAGAAATGAAGTCATTAGATGCATACATATGGGTTTATTATGTGTTCAAGAAGATCCTGATGACAGACCATCCATGGCATCAGTAGTCCTCATGCTCAGCAGTTACTCTGTTACTCTACCATTGCCTCAACAACCAGCATTCTTCATTCGCAGTGGGACGCAGTCGGGCTTTCCAATAAATGCACTGGAATCAGATCAATCTGCAAGCAAGTCAACGCCATGGTCTCTGAATGAAACATCGATTTCTGAACTATATCCTAGGTAG 2046 0.4404 MMPPRFNITLLFLCMLGLLRCLTLSPAAALTYLNNSCPQTPNTTAAISPNTTYQTNLNLLLSFLSSNATIDSGFYNATVGREPSDVVYGLFLCRGDLSPQLCQECVGAATNKSRDQCQGIKAAVIWYDECILHYSNQSIFSTLIEEPILMMRNTVNLTDPDGFNRTLQGIMDSIRTQAVNDRSGKKYYATKEENYLAPQMVQRVYSLVQCTPDLSATQCNLCLLGVEDYLQECCSARQGARVVFPSCSFRYEFYPFYTAEAGAEAPAPTPLLLPPAPPSQPTTEGKGGISSQTIITIVVPTVVSVGIFYILCYCFISRKARKKYNTEEENVENDITTVQSLQFDFGTLQAATNNFSDDNKIGQGGFGDVYKGTLSSGQEIAIKRLSRSSVQGAVEFKNEIVLVAKLQHRNLVRLLGFCLEGEEKILVYEYVPNKSLDCFVFDPDKQGQLDWSRRYNIIGGIARGVLYLHEDSRLRVIHRDLKASNVLLDGDMNPKISDFGMARIVGVDQTQGNTNRVVGTYGYMSPEYAMRGHFSAKSDVYSFGVLVLEIISGKKNGSFYESGQTEGLPSYAWKLWRDGTPLELMDPMMGDSYARNEVIRCIHMGLLCVQEDPDDRPSMASVVLMLSSYSVTLPLPQQPAFFIRSGTQSGFPINALESDQSASKSTPWSLNETSISELYPR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1228 681 ProSiteProfiles Gnk2-homologous domain profile. 145 256 IPR002902 -
Vvi3g1228 681 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 680 - -
Vvi3g1228 681 SUPERFAMILY Protein kinase-like (PK-like) 341 646 IPR011009 -
Vvi3g1228 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vvi3g1228 681 SMART serkin_6 355 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1228 681 FunFam Cysteine-rich receptor-like protein kinase 25 147 256 - -
Vvi3g1228 681 Pfam Protein tyrosine and serine/threonine kinase 358 624 IPR001245 GO:0004672|GO:0006468
Vvi3g1228 681 CDD STKc_IRAK 361 626 - -
Vvi3g1228 681 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Vvi3g1228 681 Gene3D - 146 256 IPR038408 -
Vvi3g1228 681 Gene3D - 31 138 IPR038408 -
Vvi3g1228 681 FunFam cysteine-rich receptor-like protein kinase 10 431 633 - -
Vvi3g1228 681 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 30 138 - -
Vvi3g1228 681 MobiDBLite consensus disorder prediction 662 681 - -
Vvi3g1228 681 Gene3D Phosphorylase Kinase; domain 1 315 430 - -
Vvi3g1228 681 Pfam Salt stress response/antifungal 45 137 IPR002902 -
Vvi3g1228 681 Pfam Salt stress response/antifungal 156 253 IPR002902 -
Vvi3g1228 681 Gene3D Transferase(Phosphotransferase) domain 1 431 633 - -
Vvi3g1228 681 ProSiteProfiles Gnk2-homologous domain profile. 35 139 IPR002902 -
Vvi3g1228 681 ProSiteProfiles Protein kinase domain profile. 355 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1228 681 FunFam Cysteine-rich receptor-like protein kinase 10 318 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1228 Vvi-Chr3 17570949 17574718 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1228 7 681 Receptor kinase-like Gene Family AT4G05200 51.245 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi3g1228 PK_Tyr_Ser-Thr 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1228 - - vvi:100242699 1288.86