Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1223 ATGGCAAGGATCTTTGGAGGAAGTGAAGGTGAAACTAACACCGCTACAATAGTTGGAATACATGGATATATGGCTCCAAACTATGTTATGGAAGGGCTATATTCAATTAAGTCTGATGTTTTTGGCTTCAGAGTTCTCTTGCTTAAGATCATGACTGAGAGAAGGAATGCTGGTTTCCATCTCTCCAAGCGCGCTCCTAGCCTCCTATCATATGCATGGCAACTATGGAATGAAGGAAAGGGGTTGGAGTTGATGGATCCATTATTGACTGAATCATGCTGCCCGGATGAATTTTTGAGATGCTACCATATTGGATTACTATGTGCTCAAGAAGATGCATTTGACAGGCCAACCATGTCATCTGTAGTTGTCATGTTGAAAAGTGAAACTGTGACCCTTCGCCAGCCTGAAGGACCTGCCTTCTCCATTGGGAGATTCACCGACTGCGATGAAAAAATGTCTGTGGTTGTCTGTCAATGGTTTGACAATTTCAAATATCGGGCCTTGCTGATGGAGCTGGTGAACAAGTACACAATTTCATCATATTGTGGACCGATATACACTAATATTGCTATCTGTAGTCAAATCCTTGTTGTCTTGTATAATTCAGAAAAGATCACTTTCATGAATACATTTGATCTCAGTTCCAGTTTCTAA 657 0.411 MARIFGGSEGETNTATIVGIHGYMAPNYVMEGLYSIKSDVFGFRVLLLKIMTERRNAGFHLSKRAPSLLSYAWQLWNEGKGLELMDPLLTESCCPDEFLRCYHIGLLCAQEDAFDRPTMSSVVVMLKSETVTLRQPEGPAFSIGRFTDCDEKMSVVVCQWFDNFKYRALLMELVNKYTISSYCGPIYTNIAICSQILVVLYNSEKITFMNTFDLSSSF* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1223 218 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Vvi3g1223 218 FunFam Os07g0555700 protein 10 132 - -
Vvi3g1223 218 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 152 - -
Vvi3g1223 218 SUPERFAMILY Protein kinase-like (PK-like) 2 126 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1223 Vvi-Chr3 17521602 17523801 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1223 1 141 Receptor kinase-like Gene Family AT4G23150 48.936 5.56e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi3g1223 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1223 - - vvi:109121465 274.633