Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1222 ATGGGTGGCGATAGGCACAAGCATATCAACAATTCTATTAGTGGTGGTGAGGAGAAAGAAAGCAAGGGAGAGGTTGTTTTACTCGACTTTGATGGAGGAAGATTCAATTATGATTACCCAAGTGAAAATTTACACGGAGATACCCTAGCGAAATCCAAGGACCTCCCTTTGATTGGGTTAGAGCTCATACATAAAGCTACACAACATTTTTCAGAAGAAAATAAGCTTGGACAAGGTGGGTTAGGCCCAGTATACAGGGGGACGTTAGCAGATGGAAGGGAAATTGCTGTTAAAAGGCTCTCCAGAACTTCTGGTCAAGGACTTGAGGAATTCAAGAATGAAGTTACCTTAATTGCCAGGTTACAACATAGAAACCTTGTGAGACTCTTGGGCTGCTGCTTAGAGGGAAATGAATCCCTGCTCATTTATGAATACATGCCTAACAAAAGCCTAGATGTCTTCCTCTTTGATTCAACTACAAGTGCTCAGTTGGATTGGAAAACCCGTCTTAACATCATCAATGGAATTGCTCGGGGCATTTCATATTTGCATGAGGATTCTCGCCTTAGGATCATCCATAGGGACCTAAAGCCTAGCAATGTGTTATTGGACTCTGACATGAACCCGAAAATCTCCGACTTTGGAATGGCGAGGATCTTTGCAGGAAGTGAGAATGGAACTAACACAGCTAGAATAGTGGGATCATATGGATACATGGCTCCAGAGTATGCCATGGAAGGGTTATACTCCATTAAGTCTGATGTTTACAGTTTTGGAGTTGTCTTGCTTGAGATCATAACTGGGAGAAAGAATGCTGGTTTCCATCTCTCTGGAATGGGTCCAAGCCTCCTATCGCATGCATGGCAGTCGTGGAATGAAGGGAAAGGGTTGGAGTTGATGGATCCATTATTGGGTGATTCATGTTGCCCAGATGAGTTTCTGAGATGCTACCATATTGGGTTATTGTGTGTTCAAGAAGATGCATCTGACAGGCCAACCATGTCATCTGTCATTGTAATGTTAAAAAGTGAAAGTGTAAGCCTTCGACAGCCTGAAAGACCTGCCTTCTCTGTGGGGAGATCCACCAATCAACATGAAACAGCAAGTGGTAGCAGTTCTTCTGTCAATGGTTTAACAGCTTCTATTGCTTTGCCTCGATGA 1161 0.4324 MGGDRHKHINNSISGGEEKESKGEVVLLDFDGGRFNYDYPSENLHGDTLAKSKDLPLIGLELIHKATQHFSEENKLGQGGLGPVYRGTLADGREIAVKRLSRTSGQGLEEFKNEVTLIARLQHRNLVRLLGCCLEGNESLLIYEYMPNKSLDVFLFDSTTSAQLDWKTRLNIINGIARGISYLHEDSRLRIIHRDLKPSNVLLDSDMNPKISDFGMARIFAGSENGTNTARIVGSYGYMAPEYAMEGLYSIKSDVYSFGVVLLEIITGRKNAGFHLSGMGPSLLSHAWQSWNEGKGLELMDPLLGDSCCPDEFLRCYHIGLLCVQEDASDRPTMSSVIVMLKSESVSLRQPERPAFSVGRSTNQHETASGSSSSVNGLTASIALPR* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1222 386 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 37 145 - -
Vvi3g1222 386 Gene3D Transferase(Phosphotransferase) domain 1 146 355 - -
Vvi3g1222 386 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g1222 386 SUPERFAMILY Protein kinase-like (PK-like) 56 341 IPR011009 -
Vvi3g1222 386 Gene3D Phosphorylase Kinase; domain 1 45 145 - -
Vvi3g1222 386 CDD STKc_IRAK 76 342 - -
Vvi3g1222 386 ProSiteProfiles Protein kinase domain profile. 70 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1222 386 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 43 380 - -
Vvi3g1222 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Vvi3g1222 386 FunFam Liguleless narrow1 146 349 - -
Vvi3g1222 386 Pfam Protein tyrosine and serine/threonine kinase 73 339 IPR001245 GO:0004672|GO:0006468
Vvi3g1222 386 Pfam Domain of unknown function (DUF3403) 343 386 IPR021820 GO:0004674
Vvi3g1222 386 MobiDBLite consensus disorder prediction 356 380 - -
Vvi3g1222 386 SMART serkin_6 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1222 386 MobiDBLite consensus disorder prediction 351 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1222 Vvi-Chr3 17495625 17497702 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1222 37 382 Receptor kinase-like Gene Family AT4G23140 55.114 5.90e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi3g1222 PK_Tyr_Ser-Thr 4.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1222 - - vvi:100852713 627.861