Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1208 ATGGCCCAAGAAGGTGGCAATGATGAAGAAAAGTGGTGGCTGTGCATCGACAAGACTGGAACACTATGCAGAACAAAAAATGTTGTAAGCGATCCAGCATGCATGGTGATCATGGAACCCAACTCCGGAAACCAGGACTGGACCAACAAGTACTGGACCACCCATATCATTGGAGCTGCATCTGGAGCTACCGTCTATAAAGCTTCCTTCTATCCGGACTTCGAGACTTTGGAAGCTTTGCCTGATTACGAAACCTTTGTAGCCATCAAAGTCTTCAAGGCCAAACAAACAACTGAGATACAGAAGCTGAAGCAAGAACTCCAACACAGTGCCTTTCTTGCTGGTCATCCTCACCCCAACATAATCCGAATCAAAACCGAATTCGCTGTCGGTGATAATCTTTATGTCGTGATGCCTTTCATGGCTTGGGGTTCCCTTCAATCCATTATATCTTCTCGCTTCCCAGAGGGTTTTCCCGAAGAATGCGTCCGCATAGCTCTCAGAGAAACCCTAAAGGGCTTATCATATATCCATCGGATGGGCCAGCTTCATAAAAATGTGGACGCCAGGTACATCTTTCTTTGCCCATATACGCCAGCTATAAAGCTCGCCTTTGCAGCATCCCTCTACGAACAAAATACCAACTTCCTTGGTCATGGACCCTCTTATGCCATGCCTCACTGTATGTGGCCAGCACCCGAGGCCAGTCTGAATTACACTAGCAAGGCTGACGTATGGCTTGTTGGCATCACTGCATTGCAGCTGGGATATGGACTAAGAGTAGCCAATCATAACAGTATGGTTGCCATGGTCAAGAATTTGAGAGGAAATTACCCAATGGAAGACCAAAAGTTCTCCAAATCTTTTAAGCATTTGGTGGCCCTATGCCTAGATCCAAACCCATCAAGACGGCCACAGCCAGACCAGCTGCTAAGGCATAGATTCTTCGGTAACTGTCAGGATGTTTGTTACTTTTCAAATATGGTAAAGCCACCAGAACAACAGAATGGAAGAAATTTGGAGGTACGAAGATCATGA 1038 0.4615 MAQEGGNDEEKWWLCIDKTGTLCRTKNVVSDPACMVIMEPNSGNQDWTNKYWTTHIIGAASGATVYKASFYPDFETLEALPDYETFVAIKVFKAKQTTEIQKLKQELQHSAFLAGHPHPNIIRIKTEFAVGDNLYVVMPFMAWGSLQSIISSRFPEGFPEECVRIALRETLKGLSYIHRMGQLHKNVDARYIFLCPYTPAIKLAFAASLYEQNTNFLGHGPSYAMPHCMWPAPEASLNYTSKADVWLVGITALQLGYGLRVANHNSMVAMVKNLRGNYPMEDQKFSKSFKHLVALCLDPNPSRRPQPDQLLRHRFFGNCQDVCYFSNMVKPPEQQNGRNLEVRRS* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1208 345 SUPERFAMILY Protein kinase-like (PK-like) 44 339 IPR011009 -
Vvi3g1208 345 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 49 321 IPR047173 GO:0043539
Vvi3g1208 345 Pfam Protein kinase domain 84 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1208 345 ProSiteProfiles Protein kinase domain profile. 51 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi3g1208 345 Gene3D Transferase(Phosphotransferase) domain 1 48 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1208 Vvi-Chr3 17385158 17386195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1208 57 324 MAP Kinase Kinase Kinase Kinase AT4G14480 34.797 8.25e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vvi3g1208 Pkinase 2.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1208 K08835 - vvi:104878957 723.391