Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1205 ATGAAGTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACTCCGAGCATTTTATGACAAGAGGATCTCACAGGAGGTCAATGGGGATGCACTGGGCGAGGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGCTTCATAGGGGTACCCCATGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGGTGCATTGTCAGCCAAGACCTCTCTGTTTTGAACTTGGTTATAGTGAAGAAGGGTGAGAGCGATCTTCCTGGATTGACCGACACAGAGAAACCTAGGATGAGGGGTCCAAAGAGAGCTTCTAAGATTCGAAAGCTCTTCAACCTCTCTAAGGAGGATGATGTTCGGAAGTATGTCAACACATATCGTCGAACCTTCACAACAAAATCTGGGAAGAAATGCAGTAAAGCCCCTAAGATTCAGAGGCTGGTGACCCCATTGACTCTGCAGAGGAAGCGTGCAAGGATTGCAGAGAAGAAGAAGAGAATTGCAAAGGCAAAGTCAGAGGCAGCCGAGTACCAAAAGCTCCTTGCTACCAGGTTGAAGGAGCAGCGAGAACGCCGCAGTGAGAGCTTAGCAAAGAGGAGATCCAGGCTGTCTGCTGCCTCAAAGCCATCAGTTGCTGCATAA 750 0.4853 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVSLLLHRGTPCFRGYGRRNGERRRKAVRGCIVSQDLSVLNLVIVKKGESDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKCSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLATRLKEQRERRSESLAKRRSRLSAASKPSVAA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1205 249 Coils Coil 189 216 - -
Vvi3g1205 249 MobiDBLite consensus disorder prediction 222 237 - -
Vvi3g1205 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Vvi3g1205 249 Gene3D - 133 234 - -
Vvi3g1205 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vvi3g1205 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Vvi3g1205 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 240 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vvi3g1205 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Vvi3g1205 249 MobiDBLite consensus disorder prediction 222 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1205 Vvi-Chr3 17343699 17348912 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1205 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 70.281 7.61e-118 333