Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1204 ATGCCGCCGCGAGCCGCCGTGAGACGACCTTCGACAGCGTCTGCTCTCAAGAAGAAGCCTCCAAGAGAGGAAAAGGAGGAGAAGGAGTTTGTTGTGGGAGACATGGATAGATCAGAAAGGTTGGAGCTTGAAGATAATGACCCACAGTCTGATGCAGAAGACGATATGGGGCATTATATGGGAACAGAAGAGGAATGTCGGGAACAGAGAATTGATGGAGATGATGACCTGATGGGAGATATGATGGAAGGCGAGGATGAGGAAGAGGAGGATATGGGTGAGGATGATGTGGGAGGTGAACATGAGGAGATGATGGATGGGTATGAAGACGAGCATCATGATTTAGTTAAAGAGCGTCGAAAGCGTAAGGAGTTTGAGGTCTTTGTTGGTGGATTGGACCGAGATGTCACAGAAGATGATCTCTTTCACTTTTTCAGACAGGTGGGTGATATCACTGAAGTGAGACTTATGAAGAATGCCCTTACTCAGAAGAACAAGGGCTTTGCTTTCATACGGTTTGCAACTGTTGAGCAGGCTAGGCGTGCTGTCAATGAACTTAAGCATCCAGTGATTAATGGAAAGCAATGTGGGGTAGCTCCAAGTCAGGACAGTGACACACTCTTTGTTGGTAACATATGCAAGACATGGACAAAAGTAGCTGTGAAGGATAAGCTTGCATACTACGGTGTTGACAAGTATGAAGACTTGACATTGGTTGAAGATACCAAAAATGAGGGCATGAATCGGGGATTTGCTTTTTTGGATTTCTCTTCCAGGGCAGATGCCTTGGAAGCTTGCAAACGCTTGCAAAAGAGGGATGTTGTGTTCGGTACAGATCGAACAGCAAGAGTTGCATTTGCAGACACTTTCATAGAACCTGATGACGAAATCATGTCACAGGTCAGGACGATATTCCTTGATGGGTTGCCTGCTACTTGGGATGAGGATCGTGTCAGGGATTATCTTAAAAAGTTTGGGAGGATTGAAAAGATTGAACTTGCAAGAAATATGCCAGCTGCTAAAAGAACTGATTTTGGTTTTGTGACATTTGACACTCATGATTCTGCTGTGGCTTGTGTTGACAGTATTAATAATTCTGAGCTTGTTGATGGAGAAAGGCTGGTGAAAGTTAGAGCAAGGCTGTCTAGGCCACGCCAGAGAGGTAAGTCTGCTAAGCATGCTCGAGGTGGTTATCTAGTTGCACAGGGCAGCGGTCGAGGTTTCAAGGCTCCATGGGGATCTAGTTCATCCCGCATGGATTCTTGGAAGTTTACAGGTCGTGGAGGGAGAAGTATGCAAACGCGTGGAGCATATGATGGTGGTCTTAAGCGGCCAGTTGGTCCTAGGGATAGACACTCAATGATGGAGATGGTTCCTACTAGAGTTGGGAGCAGGAGACGATTTCCTTCCCCAGAGAGTTCCTTCGGTCGAAGGTCACCTGTTTATGAAAAGAGCAGCACGAAGAGGGAGTACATTCAACGTGATGAATCCTTTTCTAGGCCAGCTGTTTTTGCTAGAGACCCCACAGAGAGGCGTTATTATAAAGATAATTACTCTTCACGTGGATCTGAGTATTTGGACAGTCCTCCTAGAAATGTTTCTCGTGCTGCTGGTCATAGAGCTCCTCTTTATGAAGATGATGACTATGACCGATATTTGGAACGACCCACAAACTATCATGATGGTCATAGGCATGATTATGGTTCTATTTCCAGTTCAAAACGTTCCCATTCAGCAATGGAGGAAGTTCATTCTCGTTATGCTGAGCCTCCAATTAGGCACTCGAGGGCCCGTTTTGATTATGGGGGGAGCAATTCAGGATTGCCCTATGACGACCATTATGGAAGTGAATCTACAAGTGAACGCAGGTTTGAGAAAAAAATGATGGGCCGTGGTTCTCGTCTAGGGTATGATGGAGGTATGCGAAGTTCTTCAGGGCATTCTCGAGGAATGTATGAGACAAGAACATCAACTACTGGGTACAGAAGAGATGATATTAGCCGGGGGAATGAAGAAGGGATGTATTCCAGCTATGACCGTGAGTATATGTCCAGGGACTACATGCCTTCTCGATCAGATCTAGGGACAGGTTCTTACCCTTCTGACTACCCTAGTCGTCGCATGAATGATGGATACTTGAGTGGCCGAGGTTCAGGTTCAGGTTCATATTATTAA 2175 0.4579 MPPRAAVRRPSTASALKKKPPREEKEEKEFVVGDMDRSERLELEDNDPQSDAEDDMGHYMGTEEECREQRIDGDDDLMGDMMEGEDEEEEDMGEDDVGGEHEEMMDGYEDEHHDLVKERRKRKEFEVFVGGLDRDVTEDDLFHFFRQVGDITEVRLMKNALTQKNKGFAFIRFATVEQARRAVNELKHPVINGKQCGVAPSQDSDTLFVGNICKTWTKVAVKDKLAYYGVDKYEDLTLVEDTKNEGMNRGFAFLDFSSRADALEACKRLQKRDVVFGTDRTARVAFADTFIEPDDEIMSQVRTIFLDGLPATWDEDRVRDYLKKFGRIEKIELARNMPAAKRTDFGFVTFDTHDSAVACVDSINNSELVDGERLVKVRARLSRPRQRGKSAKHARGGYLVAQGSGRGFKAPWGSSSSRMDSWKFTGRGGRSMQTRGAYDGGLKRPVGPRDRHSMMEMVPTRVGSRRRFPSPESSFGRRSPVYEKSSTKREYIQRDESFSRPAVFARDPTERRYYKDNYSSRGSEYLDSPPRNVSRAAGHRAPLYEDDDYDRYLERPTNYHDGHRHDYGSISSSKRSHSAMEEVHSRYAEPPIRHSRARFDYGGSNSGLPYDDHYGSESTSERRFEKKMMGRGSRLGYDGGMRSSSGHSRGMYETRTSTTGYRRDDISRGNEEGMYSSYDREYMSRDYMPSRSDLGTGSYPSDYPSRRMNDGYLSGRGSGSGSYY* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1204 724 Gene3D - 205 288 IPR012677 -
Vvi3g1204 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 289 IPR000504 GO:0003723
Vvi3g1204 724 Gene3D - 292 443 IPR012677 -
Vvi3g1204 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 273 IPR000504 GO:0003723
Vvi3g1204 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Vvi3g1204 724 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 370 IPR000504 GO:0003723
Vvi3g1204 724 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 63 205 - -
Vvi3g1204 724 Gene3D - 63 200 IPR012677 -
Vvi3g1204 724 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 19 679 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 78 97 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 1 97 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 16 45 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 615 632 - -
Vvi3g1204 724 CDD RRM_SF 207 274 - -
Vvi3g1204 724 FunFam Heterogeneous nuclear ribonucleoprotein Q 206 288 - -
Vvi3g1204 724 CDD RRM_SF 304 378 - -
Vvi3g1204 724 CDD RRM_SF 127 198 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 514 537 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 419 494 - -
Vvi3g1204 724 MobiDBLite consensus disorder prediction 52 77 - -
Vvi3g1204 724 FunFam RNA recognition water-stress protein1 292 413 - -
Vvi3g1204 724 SUPERFAMILY RNA-binding domain, RBD 126 373 IPR035979 GO:0003676
Vvi3g1204 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 382 IPR000504 GO:0003723
Vvi3g1204 724 SMART rrm1_1 206 285 IPR000504 GO:0003723
Vvi3g1204 724 SMART rrm1_1 303 378 IPR000504 GO:0003723
Vvi3g1204 724 SMART rrm1_1 126 199 IPR000504 GO:0003723
Vvi3g1204 724 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 203 IPR000504 GO:0003723
Vvi3g1204 724 MobiDBLite consensus disorder prediction 658 687 - -
Vvi3g1204 724 SUPERFAMILY RNA-binding domain, RBD 202 289 IPR035979 GO:0003676
Vvi3g1204 724 MobiDBLite consensus disorder prediction 603 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1204 Vvi-Chr3 17294581 17304951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1204 120 380 Eukaryotic Initiation Factors Gene Family AT1G49760 21.754 2.43e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1204 - - vvi:100266805 1338.17