Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1202 ATGGCTTCTCCACCACCTATGAGAGGGCTAAAGGAAGAGAATGGTGAAAAGGCAGATGAGAAAATGGGAGTTTATGTGACATGGAAAGAGCTAAGTGTAACAGTCTCCAATGGAAGCAAATTCATTCTTCAAGGCCTCACTGGTTATGCACAACCTTCTCAGGTTTTGGCCATCATGGGTCCTTCTGGCTCTGGCAAATCTACTCTTCTTGATGCATTGGCTGGTAGGTTAGATTCAAGAACAAGGCACACAGGAGAGATTCTAATCAATGGTCGTAAACAGTGGTCAGCATATGGGACAATGGCTTATGTGACTCAGGATGATACTCTTACATGGACTCTTACTGTTAGAGAAGCTGTGTTCTACTCAGCACAGCTCCAACTCCCCAAGTCCATGTCGATATCTGAGAAAAAAGAGCGGTCAGAGACGACCATAAGGGAGATGGGGCTGCAGGACTCCATGGACACAAGAATAGGAGGGTGGGGAAGCAAAGGCCTCAGTGGTGGCCAAAAGAGGAGGGTTAGCATTTGTATCGAGATTTTAACGCGCCCAAAGCTTCTCTTCCTTGATGAACCAACGAGCGGATTAGACAGCGCTGCATCTTATTTTGTCATGAGGAGGATCGTGGACCTTGCTCAACAAAATGGAATGACAATTATCGCGTCCATTCATCAACCTAGCAGTGAAGTCTTTGAGCTTTTCCCTAATCTTTGTCTTCTTTCTTCAGGTAGAACCATATATTTTGGTCCCTCTCATTGTGCTAATGAGTTTTTTGCATTGAATGGCTTCCCATGCCCAGTTCTCCAGAATCCATCTGATCACTATCTTAGAACAATCAATACAGACTTTGATGAGGACATTGAACAAGGCATTAGTGGAAAGAAAACAACTGAGGAAGTGATTAATATGCTTGCAAAATCTTATGAATTATCAGACACCTGCAAGCAGATTAAAAGACAGGTTGCTGAGATATGTAGACAAGGTGGAGGAGAATTGGAGAAGAAGGGGAGCCAAGCTAGCTTCATTACTCAATGCCTCATTCTCACTCGAAGGTCTTTCTTGAACATGCATCGTGATCTAGGTTACTATTGGTTGCGACTTGTTATCTATGTCACGTTGGGTTTAGGGTTAGGCACCGTCTTTTATGATGTTGGCGCTGGCTATGAATCAATTCGAGCAAGAGGTTCAATGATCATGTTCGTGGTGTCCTTCTTGACAATCATGGCCATTGGAGGGTTCCCATCATTTGTGGAAGAAATGAAGGTGTTTAGACGTGAAAGATTGAATGGGCACTACGGCCCTGGTGCATTCGTCATTGGCAACACGTTTTCTTCAATGCCTTTCTTGCTCATCATCTCATTGATCCCTGGTGCAATTACTTACTACCTTGTTGGACTTCAACAAGGAGGCAAATGCTTCGTCTACTTTGTAACGGTACTTTTTACTTGTATGCTATTGGTCGAGAGCTTGATGATGATTGTTGCAAGCATCATGCCAAACTTCCTTATGGGGCTAATAACAGGTGCTGGAATCCAAGGACTGATGATACTAAGCGCCGGGTTTTTTCGATTACCAAGTGATCTTCCCAAGCTTTTATGGAGGTATCCATTGTACTACATTGCCTTCCACAAGTATGCCTATCAAGGGCTATATAAGAATGAGTTTGAAGGGCTAACATTTCCTAGTAATGAAGCATTAGGGCATCCTACTACCATCAATGGTGACAAAATTTTGAGGGATATATGGCAAGTAGAAATGGGATACTCCAAGTGGATCGATTTAGCTATCTTATTTGCAATGGTGGTAGTTTATAGACTCGTATTCTTCGTAATTATTAAGATTTTTGAAATAATTAAGATTGTGATAGAGAATGGATTCTCTAAATTGCTTATACAAAAGATTCAATGTCATATGATAAGTAAACAATTACAAAATTAA 1938 0.4185 MASPPPMRGLKEENGEKADEKMGVYVTWKELSVTVSNGSKFILQGLTGYAQPSQVLAIMGPSGSGKSTLLDALAGRLDSRTRHTGEILINGRKQWSAYGTMAYVTQDDTLTWTLTVREAVFYSAQLQLPKSMSISEKKERSETTIREMGLQDSMDTRIGGWGSKGLSGGQKRRVSICIEILTRPKLLFLDEPTSGLDSAASYFVMRRIVDLAQQNGMTIIASIHQPSSEVFELFPNLCLLSSGRTIYFGPSHCANEFFALNGFPCPVLQNPSDHYLRTINTDFDEDIEQGISGKKTTEEVINMLAKSYELSDTCKQIKRQVAEICRQGGGELEKKGSQASFITQCLILTRRSFLNMHRDLGYYWLRLVIYVTLGLGLGTVFYDVGAGYESIRARGSMIMFVVSFLTIMAIGGFPSFVEEMKVFRRERLNGHYGPGAFVIGNTFSSMPFLLIISLIPGAITYYLVGLQQGGKCFVYFVTVLFTCMLLVESLMMIVASIMPNFLMGLITGAGIQGLMILSAGFFRLPSDLPKLLWRYPLYYIAFHKYAYQGLYKNEFEGLTFPSNEALGHPTTINGDKILRDIWQVEMGYSKWIDLAILFAMVVVYRLVFFVIIKIFEIIKIVIENGFSKLLIQKIQCHMISKQLQN* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1202 645 Pfam ABC-2 type transporter 224 324 IPR043926 GO:0140359
Vvi3g1202 645 Pfam ABC transporter 44 194 IPR003439 GO:0005524
Vvi3g1202 645 SMART AAA_5 52 252 IPR003593 GO:0016887
Vvi3g1202 645 FunFam ABC transporter G family member 11 24 307 - -
Vvi3g1202 645 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 267 IPR003439 GO:0005524
Vvi3g1202 645 CDD ABCG_EPDR 23 249 - -
Vvi3g1202 645 Gene3D - 25 350 IPR027417 -
Vvi3g1202 645 Pfam ABC-2 type transporter 343 555 IPR013525 GO:0016020|GO:0140359
Vvi3g1202 645 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524|GO:0016887
Vvi3g1202 645 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 19 628 - -
Vvi3g1202 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 252 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1202 Vvi-Chr3 17271807 17276119 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1202 42 228 Calmodulin-binding Proteins AT2G36910 28.125 4.09e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1202 K05681 - vvi:100251372 1220.68