Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1200 ATGGCTTCCTCTTCGTTCCGACCTAGTGTAAGTGATTCTGAAATTGTCTATGGCTCAGCTTCTTTGCAGAGTCATAGGCGAGAAACCAGGAAGCCCCTGGAGGTAGAAAGTGTTCCAAGCCCAAATAGTAGGGAAGTAGGAGGAGGAGTTAGTGAGGAGGGTGGTGTTTACTTGACATGGGAGAACCTGTGGGTGACGGTTTCCAATGGAAAAGGCGGCAGCAGATCGATCCTTCAAGATCTTACGGGCTATGCCAGGCCCGGCGAGGTCTTGGCCATCATGGGTCCTTCTGGTTGTGGCAAGTCCACTCTTCTTGATGCATTAGCAGGAAGATTAGAAGCAAACCAAAGTGGGAGCATACTTGTCAATGGTCGTAAACAGACACTAGCTTACGGAACATCGGCTTATGTGACTCAAGATGACACCTTGCTTACCACTTTAACTGTTGGAGAAGCCGTATACTACTCTGCTCAGCTCCAATTGCCAGACTCCATGTCAAAGCAGGAGAAGAAGGAGAGAGCAGACATGACTATAAAAGAAATGGGCTTACAAGATTCCATAAACACAAGGATAGGAGGGTGGGGTGCTAAGGGAATTAGTGGTGGGCAAAAGAGGAGAGTCAGCATTTGTGTAGAGATCTTAACACACCCCAACCTTCTCTTCCTTGATGAACCAACAAGCGGGCTTGACAGTGCAGCTTCATATTATGTCATGAGCAGAATTGCCGGTCCTGATTTCCGACATGGAAGGACCATCATTACATCCATTCATCAACCCAGTAGTGAAGTCTTTGCGCTCTTTGACAATCTTTGTCTTTTGTCTTCGGGTAGAACAGTATACTTTGGTCCCGCTCGTGCAGCAAATGAGCTTTTCTCTAGAAATGGTTTCCCATGCCCAACTCTCCAAAATCCATCAGATCACTTCCTCAAAACTATAAACAAGGATTTTGAAGAGGACATTGAACAAGGTCTAGGAGGAAAGAAACCCAAAGAAGAAGTAATCGATATCCTCATAAAGGCATACAAATCATCTGGGAGTTGCCAACAAGTTCAAGCACAGGTTACTGAAATCTGTAAACAGGAAGGTGATCAAGCGCTGCAGAAGTCGAGAGACCATGCCGGTTTCGTTAACCAGTGCCTTATTCTTACAAAAAGATCTTATGTGAACATGTCTCGCGACCTAGGATACTATTGGATGCGCCTAGGTGTGTACATCATGGTGTCTTTTGCTCTGGGCACCATTTTTTACGATCTCGGCTTTAGTAACAGCTCAATTCAGGATAGAGGTTCAATGCTCATGTTTGTAGCATCATTCCTGACATTCATGAGTATTGGTGGATTCCCATCTTTTGTGGAGGACATGAAGGTCTTCGGACGGGAGAGACTAAACGGCCATTATGGTACAGGCGCATTTGTTGTTGGAAACACACTTTCTTCTGTACCTTTCTTGCTATTGATTTCTCTGATTCCGGGTGCAATTGCTTATTACCTTGCTGGACTTCAGAAAGGATGTGAATACTTCATCTACTATGCTTTGGTGCTTTTTGCTTGTATGATGTTGGTCGAAAGCATTATGATGATTGTCGCGAGTCTCGTCCCCAATTTCCTCGTGGGCATAATAACAGGTGCTGGAATTCAAGGGCTGCTTATACTGTCCGGTGGTTTCTTCCGGCTGCCCGATAATCTTCCAAACATATTGTGGAGATACCCTTTATATTACGTCTCTTTCAATAGGTATGCTTACCAAGGAATGTATAAGAACGAGTTCACAGGACTAACATTTCCTGGGGATCAAAGTGGAGGGCCAGCCACCATTTCTGGTGAAGAAATTTTGAGAAAGAGATGGCAAGTGGAAATGGGTTATTCTAAGTGGGTTGATCTTGCCATCCTAGTAGGAATGATAGCTTTGTATCGGCTTCTGTTCTTGATTATCATCAAGACAACCGAAAAGGTGATGCCCCTTATCAAGGCTTTCATGTCAAGGCCTCCCAAACACACGAATCAGGCTCTTGCTGCCCATTCATAG 2025 0.4489 MASSSFRPSVSDSEIVYGSASLQSHRRETRKPLEVESVPSPNSREVGGGVSEEGGVYLTWENLWVTVSNGKGGSRSILQDLTGYARPGEVLAIMGPSGCGKSTLLDALAGRLEANQSGSILVNGRKQTLAYGTSAYVTQDDTLLTTLTVGEAVYYSAQLQLPDSMSKQEKKERADMTIKEMGLQDSINTRIGGWGAKGISGGQKRRVSICVEILTHPNLLFLDEPTSGLDSAASYYVMSRIAGPDFRHGRTIITSIHQPSSEVFALFDNLCLLSSGRTVYFGPARAANELFSRNGFPCPTLQNPSDHFLKTINKDFEEDIEQGLGGKKPKEEVIDILIKAYKSSGSCQQVQAQVTEICKQEGDQALQKSRDHAGFVNQCLILTKRSYVNMSRDLGYYWMRLGVYIMVSFALGTIFYDLGFSNSSIQDRGSMLMFVASFLTFMSIGGFPSFVEDMKVFGRERLNGHYGTGAFVVGNTLSSVPFLLLISLIPGAIAYYLAGLQKGCEYFIYYALVLFACMMLVESIMMIVASLVPNFLVGIITGAGIQGLLILSGGFFRLPDNLPNILWRYPLYYVSFNRYAYQGMYKNEFTGLTFPGDQSGGPATISGEEILRKRWQVEMGYSKWVDLAILVGMIALYRLLFLIIIKTTEKVMPLIKAFMSRPPKHTNQALAAHS* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1200 674 Pfam ABC-2 type transporter 257 356 IPR043926 GO:0140359
Vvi3g1200 674 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 300 IPR003439 GO:0005524
Vvi3g1200 674 Pfam ABC-2 type transporter 378 589 IPR013525 GO:0016020|GO:0140359
Vvi3g1200 674 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 287 IPR027417 -
Vvi3g1200 674 CDD ABCG_EPDR 57 282 - -
Vvi3g1200 674 ProSitePatterns ABC transporters family signature. 199 213 IPR017871 GO:0005524|GO:0016887
Vvi3g1200 674 MobiDBLite consensus disorder prediction 1 51 - -
Vvi3g1200 674 SMART AAA_5 87 277 IPR003593 GO:0016887
Vvi3g1200 674 FunFam ABC transporter G family member 11 56 340 - -
Vvi3g1200 674 Pfam ABC transporter 78 227 IPR003439 GO:0005524
Vvi3g1200 674 MobiDBLite consensus disorder prediction 1 23 - -
Vvi3g1200 674 Gene3D - 51 299 IPR027417 -
Vvi3g1200 674 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 44 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1200 Vvi-Chr3 17193257 17218628 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1200 77 293 Calmodulin-binding Proteins AT2G36910 30.804 7.67e-12 67.0