Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1199 ATGGAAACTGTGCCAAGGCCAAGACCTAGAGAAGTTTTAGGTGGTGTAGATAAGGAGGGTGGTATTTTCTTGACATGGGAGGATTTGTCCGTGACTGCTTCCAATGGAAAAGGTGGCAGCAGACTGCTCCTTCAAGGGCTTACTGGTTTTGCCAGGCCGGGCGAAGTCTTGGCTATAATGGGTCCTTCTGGTTGCGGCAAGTCCACTCTTCTTGATGCATTAGCAGGAAGATTGGGATCCAACATAAGTCAGAGTGGAATGGTACTTGTTAATGGCCATCAACAGACACTAGCTTATGGAACATCGGCATATGTGACTCAAGATGACACATTGATTACCACTTTAACGGTTGGAGAAGCCGTGTGCTACTCTGCTCTGCTCCAGTTGCCAGACTCCATGTCCAAATCAGAGAAGAAGGAGAGAGCAGACATGACCATAAGAGAGATGGGCCTGCAAGATGCCGTAAACACAAGAATAGGAGGGTGGGGTGTTAAGGGCATTAGCGGTGGACAAAAGAGGAGAGTCAGCATATGCATAGAGATCCTAACACACCCCAAGCTTCTCTTCCTTGATGAACCGACAAGCGGGCTTGATAGTGCTGCTTCATACTATGTCATGAGCAGAATCACAGGCCTTGATCGACAACATGGAAGGACTATCATAACATCTATTCACCAGCCCAGCTGTGAGGTCTTTGCACTCTTCGACAATCTTTGTCTTCTGTCTTCAGGTAGAACAGTATACTTTGGTCCAGCTCATGCGGCAGATGAGTTCTTCTCTTCAAATGGTTTCCCTTGCCCAACTCATCAAAACCCATCAGATCACTTCCTCAAAACAATAAACAAAGATTTTGAACAGGACATTGAACAAGGTTTTGGGGGAAAGAAATCGAAAGAGGAAGCAATTGATATTCTTACAAAGGCGTACAAATCATCTGGTAATTTCCAGCAAGTTCAATCACAGGTTGCTAAGATACATAAAAAGGAAGGTGGAGCCTTGAAGAAGAGAAGCCATGCTAGCTTCCTTAACCAGTGTCTTGTTCTTACAAGAAGATCTTTCGTGAACATGTACCGAGATTTAGGCTACTACTGGTTGCGCCTAGCAGTCTATATCGCATTGACTATAGCCCTGGGCACCATTTTTTATAACGTTGGCCATAGTAACAGTTCCATTAAGGATCGAGGTGCAATGCTCATGTATGTAGCTTCATTCTTAACTTTCATGACTATTGGTGGATTCCCTTCTTTTGTGGAAGACATGAAGGTTTTTGGGCGCGAGAGATTAAATGGGCATTATGGGTCGAGTGCATTTGTTGTTGGAAACACACTTTCTTCAATACCATACTTGCTAGTGATTTCTCTGATCCCGGGCGCAATTGCTTATTACCTAACTGGACTTCAGAAAGGATGTGAACACTCCATTTACTATGCTTTGGTGCTTTTCACTTGTATGATATTGGTTGAAGGCCTTATGATGATTGTGGCGAGTATAGTCCCCAATTTCCTCATGGGTATAATAACAGGTGCTGGAATTCAAGGGCTACTGATGCTGAGTGGTGGGTTTTTCCGATTGCCGGATGATTTTCCAAAACCATTTTGGAGATACCCATTATACTACCTGTCGTTCAACAAGTATGCTTACCAAGGGCTGTACAAGAATGAGTTCCAAGGACTAAAATTTCCTAATGATGAAGCTGGAGGGCCACCCATCATTTCTGGTGAAGAAATTTTGAGAAAGAGATGGCAAGTCGAAATGGTTTACTCGAAGTGGATTGATCTTGCCATCTTGCTGGGAATGGCAGTTTTATATCGACTTCTGTTCTTGATTACTATCAAGACAACCGAAAAGGTAATCCCACTTGTCAAGGCTTTGGTGTCAAGACCGAGCAAGCGATCAAAGCAGGTGAGGAAATTTGGGGAATGCATCACAATTTAG 1935 0.4388 METVPRPRPREVLGGVDKEGGIFLTWEDLSVTASNGKGGSRLLLQGLTGFARPGEVLAIMGPSGCGKSTLLDALAGRLGSNISQSGMVLVNGHQQTLAYGTSAYVTQDDTLITTLTVGEAVCYSALLQLPDSMSKSEKKERADMTIREMGLQDAVNTRIGGWGVKGISGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRITGLDRQHGRTIITSIHQPSCEVFALFDNLCLLSSGRTVYFGPAHAADEFFSSNGFPCPTHQNPSDHFLKTINKDFEQDIEQGFGGKKSKEEAIDILTKAYKSSGNFQQVQSQVAKIHKKEGGALKKRSHASFLNQCLVLTRRSFVNMYRDLGYYWLRLAVYIALTIALGTIFYNVGHSNSSIKDRGAMLMYVASFLTFMTIGGFPSFVEDMKVFGRERLNGHYGSSAFVVGNTLSSIPYLLVISLIPGAIAYYLTGLQKGCEHSIYYALVLFTCMILVEGLMMIVASIVPNFLMGIITGAGIQGLLMLSGGFFRLPDDFPKPFWRYPLYYLSFNKYAYQGLYKNEFQGLKFPNDEAGGPPIISGEEILRKRWQVEMVYSKWIDLAILLGMAVLYRLLFLITIKTTEKVIPLVKALVSRPSKRSKQVRKFGECITI* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1199 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 257 IPR027417 -
Vvi3g1199 644 Pfam ABC transporter 51 195 IPR003439 GO:0005524
Vvi3g1199 644 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 22 632 - -
Vvi3g1199 644 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 24 268 IPR003439 GO:0005524
Vvi3g1199 644 SMART AAA_5 53 245 IPR003593 GO:0016887
Vvi3g1199 644 ProSitePatterns ABC transporters family signature. 167 181 IPR017871 GO:0005524|GO:0016887
Vvi3g1199 644 FunFam ABC transporter G family member 11 22 308 - -
Vvi3g1199 644 Pfam ABC-2 type transporter 225 328 IPR043926 GO:0140359
Vvi3g1199 644 Gene3D - 22 336 IPR027417 -
Vvi3g1199 644 Pfam ABC-2 type transporter 344 555 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1199 Vvi-Chr3 17178182 17181964 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1199 54 260 Calmodulin-binding Proteins AT2G36910 31.944 1.98e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1199 K05681 - vvi:100254677 1263.83