Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1197 ATGGCGGCTTCTGCCTTGCAATCTAGCCCTAGTCATTTTGAAATCGAGTGTGATTCAGCGTCTATGCAAAGCCATAACCCCAAAACCAGGAAGCCTAGAGAAGTTGTAGGTAGTGATGGTGAGGACGGAGGTGTTTTCTTGACATGGGAGGATCTGTGGGTGACAGTTTCCAATGGAAAAAGTGGCTGCAGATCGATCCTTCAGGGCCTTACCGGCTATGCCAGGCCTGGCGAAGTTCTGGCTATAATGGGTCCTTCTGGCTGTGGCAAGTCCACTCTTCTTGATGCATTGGCAGGAAGATTAGGGTCCAACACAAGCCAGAGTGGGATCATACTAGTTAATGGTCATAAACAAGCGCTGTCTTATGGCACATCGGCATATGTGACTCAAGATGACACCTTGATCACCACTTTAACTGTTGGAGAAGCCGTGTACTACTCAGCTCTGCTCCAATTGCCAGACTCCATGTCAAAATCAGAGAAGAAGGAGAGGGCAGACATGACCATAAGAGAAATGGGCCTGCAAGATTCCATAAACACAAGAATAGGAGGGTGGGGTGTTAAAGGCATTAGTGGTGGGCAAAAGAGGAGAGTCAGCATTTGCATAGAGATCCTCACACACCCCAAGCTTCTCTTCCTTGATGAGCCAACAAGTGGGCTTGATAGTGCTGCTTCATACTATGTCATGAGCAGAATTGCAGGCCTTGATCGACAACATGGAAGGACCATCATAACATCTATTCACCAGCCCAGCAGTGAAGTCTTTGCACTCTTCAACAATCTTTGCCTTCTGTCTTCAGGTAGAACAGTTTACTTTGGTCCAGCTCATGGTGCAGATGAGGTATGCATAAAATTTTGGAGGGTTCGAACTGGAATTAGTAATATATCACTGATCACTGATCACTCCAACTTCAATTCAATGCAGTTTTTCTCTTCAAATGGTTTCCCTTGCCCTACTCATCAAAACCCATCAGATCACTTCCTCAAAACAATAAACAAAGATTTTGAAGAGGACATTGAGCAAGGTTTCGGGGGTAAGAAATCGAAAGAGGAAGCAATTGACATTCTTACGAAAGCATATAAATCATCTGATAATTTCCAGCAAGTTCAAACACAGGTTTCTGAAATATATAAACAGGATGGTGGAGCCTTGAAGAAGAGAAGCCATGCTAGCTTCCTTAACCAGTGTCTTGTTCTTACAAGAAGATCCTTCGTGAACATGTATCGGGATTTAGGCTACTACTGGTTGCGCCTAGCAATCTATGTCGCATTGACTGTAGCCCTGGGCACCATTTTTCACAACGTTGGCTATAGTAACAGTTCCATAAAGGATCGAGGTTCAATGCTCATGTATGTAGCTTCATTCTTGACTTTCATGAGTATTGGTGGATTCCCTTCTTTTGTGGAGGACATGAAGGTTTTTGGACGTGAGAGATTAAATGGGCATTATGGGTCGAGCTCATTTCTCGTTGGAAACACACTTTCTTCAGTACCATACTTGCTAGTGATTTCTCTTATTCCGGGTGCAATTGCTTATTTCCTTACTGGGCTTCAGAAAGAATATGCACACTTCATTTACTATGCTTTGGTTCTTTTCACTTGTATGATGTTGGTTGAAAGCCTTATGATGATTGTCGCAAGTGTAGTCCCCAATTTCCTCATGGGCATAATAACTGGTGCCGGCATTCAAGGGCTACTGATACTGGGTGGTGGGTTTTTCCGATTGCCCAATGATCTTCCTAATGTGTTCTGGAGATACCCGTTATACTACATCTCTTTCAATAGGTATGCGTACCAAGGATTGTACAAGAATGAGTTCCTAGGACTTACATTTCCTAGCAATATAGCTGGAGGACCACGCGTCATTACTGGTGAAGAAGTTTTGAGAGAGACATGGCAAATGGAAATGGCTTATTCTAAGTGGGTTGACCTTTCCATCTTGATTGGAATGGTAGTTTTATACAGATTCCTGTTCTTCATTTTTATCAAGACAACTGAGAAGGTAATCCCCACAGTTAAGGCTTTTATGTCAAGGCCTCCCAAGCAAACAAAGCAGGTGATGGCGAATCCCTTTGCTACACCTTCTGCTACACCATTACATGGAGCAAGCATATAA 2115 0.435 MAASALQSSPSHFEIECDSASMQSHNPKTRKPREVVGSDGEDGGVFLTWEDLWVTVSNGKSGCRSILQGLTGYARPGEVLAIMGPSGCGKSTLLDALAGRLGSNTSQSGIILVNGHKQALSYGTSAYVTQDDTLITTLTVGEAVYYSALLQLPDSMSKSEKKERADMTIREMGLQDSINTRIGGWGVKGISGGQKRRVSICIEILTHPKLLFLDEPTSGLDSAASYYVMSRIAGLDRQHGRTIITSIHQPSSEVFALFNNLCLLSSGRTVYFGPAHGADEVCIKFWRVRTGISNISLITDHSNFNSMQFFSSNGFPCPTHQNPSDHFLKTINKDFEEDIEQGFGGKKSKEEAIDILTKAYKSSDNFQQVQTQVSEIYKQDGGALKKRSHASFLNQCLVLTRRSFVNMYRDLGYYWLRLAIYVALTVALGTIFHNVGYSNSSIKDRGSMLMYVASFLTFMSIGGFPSFVEDMKVFGRERLNGHYGSSSFLVGNTLSSVPYLLVISLIPGAIAYFLTGLQKEYAHFIYYALVLFTCMMLVESLMMIVASVVPNFLMGIITGAGIQGLLILGGGFFRLPNDLPNVFWRYPLYYISFNRYAYQGLYKNEFLGLTFPSNIAGGPRVITGEEVLRETWQMEMAYSKWVDLSILIGMVVLYRFLFFIFIKTTEKVIPTVKAFMSRPPKQTKQVMANPFATPSATPLHGASI* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1197 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 276 IPR027417 -
Vvi3g1197 704 ProSitePatterns ABC transporters family signature. 190 204 IPR017871 GO:0005524|GO:0016887
Vvi3g1197 704 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 34 683 - -
Vvi3g1197 704 SMART AAA_5 76 267 IPR003593 GO:0016887
Vvi3g1197 704 Pfam ABC-2 type transporter 395 606 IPR013525 GO:0016020|GO:0140359
Vvi3g1197 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 47 291 IPR003439 GO:0005524
Vvi3g1197 704 MobiDBLite consensus disorder prediction 18 37 - -
Vvi3g1197 704 FunFam ABC transporter family protein-like 47 285 - -
Vvi3g1197 704 Gene3D - 45 281 IPR027417 -
Vvi3g1197 704 Pfam ABC transporter 68 218 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1197 Vvi-Chr3 17161781 17166958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1197 66 252 Calmodulin-binding Proteins AT2G36910 30.928 5.87e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1197 K05681 - vvi:100244406 1303.5