Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1193 ATGACATGCCTTCTGTACAAGGCAAGCAGGGAGGAGGTAGATTCTCGATCAGTGTTTGTTGGTAATGTGGATTATTCTTGTACCCCTGAAGAAGTGCAGCAGCATTTCCAGGCATGCGGGACAGTGAATAGAGTCACTATCCGATCCAACAAGTATGGCCAGCCAAAAGGTTATGCTTATGTTGAATTTCTTGAAACAGAGGCTGTTCAAGAGGCACTCCTCCTGAATGAATCTGAGCTACACGGCCGCCAGTTGAAGGTATCAGCAAAGCGAACCAACGTCCCTGGGTTGAAGCAGTTTCGTCCACGACGAGTAGGCTTCCGCTCAAGGAGCACACATATGCCTCCTTATCTCTGCCCCTATGGATACGGGAAGGTTCCCAGGTTCAGGATGCCCATGCGGTACAACCCGTACTACTGA 420 0.4976 MTCLLYKASREEVDSRSVFVGNVDYSCTPEEVQQHFQACGTVNRVTIRSNKYGQPKGYAYVEFLETEAVQEALLLNESELHGRQLKVSAKRTNVPGLKQFRPRRVGFRSRSTHMPPYLCPYGYGKVPRFRMPMRYNPYY* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1193 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 86 IPR000504 GO:0003723
Vvi3g1193 139 SUPERFAMILY RNA-binding domain, RBD 11 110 IPR035979 GO:0003676
Vvi3g1193 139 SMART rrm1_1 17 88 IPR000504 GO:0003723
Vvi3g1193 139 CDD RRM_II_PABPs 17 88 - -
Vvi3g1193 139 Gene3D - 10 96 IPR012677 -
Vvi3g1193 139 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 11 105 - -
Vvi3g1193 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 92 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1193 17 88 Eukaryotic Initiation Factors Gene Family AT2G36660 30.137 2.48e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1193 K14396 - vvi:100258174 277.33