Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1182 ATGGGAGTGGAGAAGGTGTTGTTGAGTGCCGGAACCGGTCCTAAGCCGGTACGCGGTCAGAACGTCACTGTCCACTGCACTGGATTTGGAAAAAATGGTGATCTTTCTCAGAAGTTTTGGAGCACAAAGGATCCTGGGCAGAAGCCTTTCACATTTAAAATTGGCCAAGGTTCTGTTATAAAAGGATGGGATGAAGGTGTGATGGGAATGCAAGTGGGAGAAGTTGCTCGTCTGCAGTGCTCTCCAGACTACGCCTATGGCCCTAATGGATTTCCAGCATGGGGAATACAACCTAACTCGGCTTTAGTTTTTGAGATTGAAGTCCTAAGCTTGCAGTGA 339 0.4779 MGVEKVLLSAGTGPKPVRGQNVTVHCTGFGKNGDLSQKFWSTKDPGQKPFTFKIGQGSVIKGWDEGVMGMQVGEVARLQCSPDYAYGPNGFPAWGIQPNSALVFEIEVLSLQ* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1182 112 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 19 112 IPR001179 GO:0003755
Vvi3g1182 112 FunFam Peptidylprolyl isomerase 1 112 - -
Vvi3g1182 112 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 111 - -
Vvi3g1182 112 SUPERFAMILY FKBP-like 2 111 - -
Vvi3g1182 112 Gene3D - 1 112 IPR046357 GO:0003755
Vvi3g1182 112 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 14 109 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1182 Vvi-Chr3 16584492 16598698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1182 47 111 Calmodulin-binding Proteins AT5G48570 41.791 6.89e-11 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1182 K01802 - vvi:100265806 238.039