Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1179 ATGGTGACTTTCTCTGGAAATTCACATTCGTCCAAGCTCGACTCTCTCAAGCAAATAGATGCCAGCTCGCTCTCCCAATCCGATCTCTACCAACTCTCCCTCTCCTCTTTCCACCCCTCCCTCCTCCAGAACGACGCCGTCGTGGTCCCCAAGATCGACCGCACCCTCTTCAATGAGAGCGCCGGAAGCCGACGCCAGACCTACTCCCGCATCTGCCTTGCTCCCCGCAAGCCCCGGTCCCGACGCCGCCTCGCCGGGCTCCTCCCGGCGCCGAAGCCCCCTCCCTCCGCAGCCCACTGCGACCCGGAGCAGTCTGAGAATAAGCTGATCATCCATTACCTGAAATCTTTGATCGGAGGGGAAGAGAATCCGAGTTCTCATGATTTGGCCCTGGTGGTTTCGGAGGAAAGGAACCATGGATCGCAATCTGAATTGGCCATGGTGGTTGCCGGAGGTGGCAGTGAATTGGGGGAAATTGTGGAGAAGGGGAAGAGAGGGAGGAAGAAGAGGATTGTGGCCGCCGGTGAGGGAGGCGGCCAGAGGCCTCTGCAGATTGTGAATAGGAACGGCGAGGTTGTTGATCTCGAGGCTTTGGCGAGCGCAGAAGATCCGTATGGCGACGAATTGAAGAGGAGGACAGTTGGTTTGGATAGGGAGGAGGAGATTTTGGGGGTTTTGAGGGGTTTGGATGGGCAGTGGTGTAGCAGGAGAAAGAAGAGGAAGATTGTGGACGCCAGTGGATTCGGGGACGCGCTACCGATAGGTTGGAAGCTGTTGTTGGGGCTGAAGAGGAGAGAGGGCCGTGTTTCGGTTTACTGCCGCAGATACATAAGCCCCAGTGGAGAGCAATTTGTATCCTGCAAGGAAGCTGCTGCATATTTGCAGTCTTATTTTGGACTTGCTGATACAAACCAACCAATGGGTCAAAGAGATGACAATATTCAGCAGGTCAACAGGATCTCTTCTGAGAGTCTTGCAGGTTCTACCCATAAGGATGACGACTTAGGAGAAGATATTATTCCCATTTCAGTTTTACCTAGTTCATCTATATCTTACGAATATGAGAAGGAAGTTGCCTTACTGGGGATCGAAAACCTGGCTGAGGTTGAAGTACGAGACCTTTTTGAATGTCACAAATGCAACATGACTTTTGATGAAAAGGATACATATTTGCAGCATCTATTATCGTCTCATCAGAGGACCACTAGGAGGTATAGACTTGGTACATCCGTTGGGGATGGTGTAATCGTCAAAGATGGAAAATATGAATGCCAGTTCTGCCATAAGATATTTCAGGAAAGGCGACGATATAATGGTCACGTAGGAATCCATGTGAGGAACTATGTCAGAAATTTTGAAGACATGCCTGGTCGCCCAAGTGTTCAAAAGACTGTTGAATCTCCATCTAGAGATGAGTTGCCTTCAAGGACCTCTAAAATGGATGCTTTGATTGAAATTGCCCAGAGTTCTATTTTTGAAACTTCTGCTGCAGCACCTAGTGATGAGCCCAATGGTGTTTGCACTTTTGGTAATCCAGATGTGATTTCTACTCCAGAAGTTCCTACTGCTGATTCTGAACATGAACAGAACTTAGGTTTTTGTCTTGGAGAACCAGAAATGGAAGATAGTATAACTAATAGAACTCTGGATGAAGAGTTGGATCAGCAAGAGGGTGACTGTGTGATGGCGGATGAAAACACAGAGAAGATCAATGGTGATAGTGATGCTGCATGTATCAAGATGGATTGTTGCTTGGATACCACAACTACCTTATCCACTAATGACAAAAATGGTTGTTCTTCTGAAAGTTTTGATGGAAAATATGGTGTTTCATTCTCCAATAATGAGGTGGAAAAGTCCGGCTTTGAGCAGAGAAGCCCTGAAACCCATTTACTTACTCCATCATCTAATCAGACAGTTTTCGATGTTGAAAATAATATGAATGATATCTCAGAGCAATCCAAACCTGGTGGAGTGGAAGAATATGAGAATAGTGGGTTGACACGTGGTTATGGAAGCAGTGATATTGGACGAGATAATGATGTTGCAACAATGACTATGAGCCAGACTCCAGAAGATAATGTATACCAGAATAGGGTTTCTGATTCCTCAATGCCCCTGGTGCACCCATTGCATTCTTTTCCCACATATAATGCAATCTCAGATAAGGGAGAAGATGAATTTTGTTGTGTAGACCAGAAGCTTCAGAACACAACCGGGTTTGAGGAGCTGAAGCTGGATGAAATAGAATCACTGAAATTTGGTTTTGTGACCGAGCAAGGACCGCTCTCTCTTCCAGAGGTTCACATGGGTCTGGAGAATGGAGCAACAATGGAAGATGGGTTTGATTCCTCCATTGGTTTTGAACCCGAAGAAGTCATGTTAAGCATGACTGGCAGACATCAGCTTACAACTGCATGCGTCTGGTGCAGAGTAGAGTTCAGCCATGAGGCTGTTGAATCTGAAATGCAATCAGACTCTGTCGGTTTTATGTGTCCAACCTGCAAGTCCAAAATCTCTGGCCAACTCAATGTACTGGACAGTGGTTTGTCCATGAATCCTCACCATCTCTAA 2574 0.4685 MVTFSGNSHSSKLDSLKQIDASSLSQSDLYQLSLSSFHPSLLQNDAVVVPKIDRTLFNESAGSRRQTYSRICLAPRKPRSRRRLAGLLPAPKPPPSAAHCDPEQSENKLIIHYLKSLIGGEENPSSHDLALVVSEERNHGSQSELAMVVAGGGSELGEIVEKGKRGRKKRIVAAGEGGGQRPLQIVNRNGEVVDLEALASAEDPYGDELKRRTVGLDREEEILGVLRGLDGQWCSRRKKRKIVDASGFGDALPIGWKLLLGLKRREGRVSVYCRRYISPSGEQFVSCKEAAAYLQSYFGLADTNQPMGQRDDNIQQVNRISSESLAGSTHKDDDLGEDIIPISVLPSSSISYEYEKEVALLGIENLAEVEVRDLFECHKCNMTFDEKDTYLQHLLSSHQRTTRRYRLGTSVGDGVIVKDGKYECQFCHKIFQERRRYNGHVGIHVRNYVRNFEDMPGRPSVQKTVESPSRDELPSRTSKMDALIEIAQSSIFETSAAAPSDEPNGVCTFGNPDVISTPEVPTADSEHEQNLGFCLGEPEMEDSITNRTLDEELDQQEGDCVMADENTEKINGDSDAACIKMDCCLDTTTTLSTNDKNGCSSESFDGKYGVSFSNNEVEKSGFEQRSPETHLLTPSSNQTVFDVENNMNDISEQSKPGGVEEYENSGLTRGYGSSDIGRDNDVATMTMSQTPEDNVYQNRVSDSSMPLVHPLHSFPTYNAISDKGEDEFCCVDQKLQNTTGFEELKLDEIESLKFGFVTEQGPLSLPEVHMGLENGATMEDGFDSSIGFEPEEVMLSMTGRHQLTTACVWCRVEFSHEAVESEMQSDSVGFMCPTCKSKISGQLNVLDSGLSMNPHHL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1179 857 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 7 645 IPR037472 -
Vvi3g1179 857 SUPERFAMILY DNA-binding domain 250 298 IPR016177 GO:0003677
Vvi3g1179 857 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 242 317 IPR001739 GO:0003677
Vvi3g1179 857 SMART c2h2final6 422 444 IPR013087 -
Vvi3g1179 857 SMART c2h2final6 375 398 IPR013087 -
Vvi3g1179 857 MobiDBLite consensus disorder prediction 457 476 - -
Vvi3g1179 857 ProSitePatterns Zinc finger C2H2 type domain signature. 377 398 IPR013087 -
Vvi3g1179 857 ProSitePatterns Zinc finger C2H2 type domain signature. 424 444 IPR013087 -
Vvi3g1179 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 422 449 IPR013087 -
Vvi3g1179 857 MobiDBLite consensus disorder prediction 649 679 - -
Vvi3g1179 857 Gene3D Classic Zinc Finger 363 449 - -
Vvi3g1179 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 375 403 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1179 Vvi-Chr3 16432183 16440959 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi3g1179 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1179 - - vvi:100260704 1662.12