Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1171 ATGGTAGGAGATAGGGGTAGAGAAGGAATTTTTCTTTCTCTTTTTAGGGATTTCTCATCCTTTATCCATTTGTACAGATTCTTACTTTTATCTAATACAAGACAAATTGATGAGGGTAAGGTGGAGTCAGAAAAGCACTTGGCCAATGAGGAGATAGTTGCTCAACTTGTGTCAATGGGATTTAACCATCTTCATTGCCAGAAAGCTGCTATTAACACGTCTAATGCTGGAGTGGAAGAGGCGATGAATTGGTTGCTATCACACATGGATGATCCAGATATAGATGTTCCCATTTCTCAAGAGGCAGAAAATGCTGAGGCCTTGTCATTTGTGGACCAATCAAAAGTGGATACTCTGATTTCATTTGGTTTTCAGGAAGACATTTCTCGGAAGGTATTGAGAGCATTGATAAAATTTCAGTACCTATGTTTCTTTTGGGGATATGAACGTCATGTGTCAATTTTCTTGTGGTAG 474 0.3882 MVGDRGREGIFLSLFRDFSSFIHLYRFLLLSNTRQIDEGKVESEKHLANEEIVAQLVSMGFNHLHCQKAAINTSNAGVEEAMNWLLSHMDDPDIDVPISQEAENAEALSFVDQSKVDTLISFGFQEDISRKVLRALIKFQYLCFFWGYERHVSIFLW* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1171 157 Gene3D - 30 104 - -
Vvi3g1171 157 PANTHER UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1 42 107 - -
Vvi3g1171 157 Pfam UBA/TS-N domain 49 85 IPR015940 -
Vvi3g1171 157 SUPERFAMILY UBA-like 35 100 IPR009060 GO:0005515
Vvi3g1171 157 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 47 88 IPR015940 -
Vvi3g1171 157 FunFam Ubiquitin carboxyl-terminal hydrolase 47 92 - -
Vvi3g1171 157 SMART uba_6 49 87 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1171 Vvi-Chr3 16250973 16251999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1171 52 95 C2H2 Transcription Factor Family AT1G04850 38.636 8.87e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1171 K11836 - vvi:100264052 190.274