Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1163 ATGGAGGTCAAAATACTGTCAAAGAAGCTCATAAAACCATCATCTCCAACACCATCCCACCTCAGGCACTTGACATTAACCCCAGTTGATCGACTTGCACCTCCAATCAAAGCATCTAATATTTTCTACTACCCTGCCAAAGGGAGCAACCCGGCGGTTGATGTTGAAAGACGGAATCGTTTGGAGACATCTCTGTCAGAGATCTTGACTCGTTTTTACCCGCTAGCAGGAAGATACGTCAGGGAGAGTCACTCAGTTGATTGTAATGATGAAGGGGTTGAATATTTGGAGGCCGAAGTGGAGGGTAAACTCAGTCGACTTCTAAGCAGGAGAAATGAGGTCATAGAGCAGGTGATTCAGTTAGCAGGCGGAGAATTCACCAATTCGCTAGCTTCAGTTCAGGTCACCGTGTTTGCCTGCGGGGGAGTAACCATTGGAGTTCGCATTCGCCACAGCGTTGTTGATGGATTCACTGCTGCTCACTTCAGTAGTGCTTGGGCGACTGCAAGCAGAGAAAGCATGGATAAAGTTATTTGGCCAAGTTTCGATTTGGCCTCTTTCTTGCCAGTAAAAGATTTACCTATGGTCAAGCCACGCCCTCCCCCTAAGATCTTTGGAGCTGATAAGGTCATGACCAGGAGGTTCATATTCGATGGGGCCAACATATCGTCCCTTAAAGCCGCAGCTTGCGATCCCAGCTTCAAACGGGAGCCTTCTCGGGTTGAGGCCGTTACAGCACTCATATGGAGAGCTCTCATGGTTGTAAGCCGAGCGAAACATGGACGCTTGAGGACTTCCCTGGCTTCCCATGCCATGAACTTGCGTGAAAAAATCGTTCCACCATTACCAGGCATTTGTTGTGGAAACCTCTACACAGAGGTGCCAGCCACATTTATGGCGGACAGTGGCAAAACCGAGCTGCCCAATTTGAAGGATTTGGTGGGTCTACTAAGGGAGGTAAAATTTAAAGAATCAGTGAGTCGCGAGGATGTGTTGTTGACTGTTATAAAATCGACGAATGAGTTACATGAAGCTTTGGGTAAAGAGGATATAGATGTGTACAACTTCACCAGCTGGTGCAGGTTTCCTTTCTATGGGAATGATTTTGGTTGGGGAAATCCTGCTTGGATGACCAGATGTCATACCCCTGTTGAAATGATCAGTCTGCAGGACACGGAATGTGGGGATGGAATTGAAGCTTGGGTGACCTTGGAAAAAAAAGACATGCTTCAATTCCAGCAAGATGGGGATATTGTGTCCTTCAGTTCCAATGGAGCTCCTTGA 1284 0.4727 MEVKILSKKLIKPSSPTPSHLRHLTLTPVDRLAPPIKASNIFYYPAKGSNPAVDVERRNRLETSLSEILTRFYPLAGRYVRESHSVDCNDEGVEYLEAEVEGKLSRLLSRRNEVIEQVIQLAGGEFTNSLASVQVTVFACGGVTIGVRIRHSVVDGFTAAHFSSAWATASRESMDKVIWPSFDLASFLPVKDLPMVKPRPPPKIFGADKVMTRRFIFDGANISSLKAAACDPSFKREPSRVEAVTALIWRALMVVSRAKHGRLRTSLASHAMNLREKIVPPLPGICCGNLYTEVPATFMADSGKTELPNLKDLVGLLREVKFKESVSREDVLLTVIKSTNELHEALGKEDIDVYNFTSWCRFPFYGNDFGWGNPAWMTRCHTPVEMISLQDTECGDGIEAWVTLEKKDMLQFQQDGDIVSFSSNGAP* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1163 427 Gene3D - 207 420 IPR023213 -
Vvi3g1163 427 Gene3D - 1 194 IPR023213 -
Vvi3g1163 427 PANTHER F21J9.9 4 420 - -
Vvi3g1163 427 Pfam Transferase family 1 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1163 Vvi-Chr3 16023963 16025246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1163 1 414 Monolignol Biosynthesis Gene Families AT5G48930 25.275 5.39e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1163 - K13065 vvi:104878920 850.892