Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1147 ATGGAGTTTCACCACAGAAAGCTGTTTTCAGATTCGGACAACACAACGGAGGAGTGCCGGTGGTACTGTGATTCTGGGTCGAACGACTCAGGTATTTGTCCACCGTCATGTTGTTCAGATTGTCCTTTGGTTTGCTCCTACTCCACTTCTACCCGCTCTCCCCCAAGAAAAGCTGAAAAGCTCTCCCCCTACTTGGTCATCTGTCTCTCCGTGCTCGCCACCACTTTCTTTGTTGTCTTCCTCTATGTTTTCTACAAGAAGTACTATTCACGGCGGCGCCTTTCTAGGAGGAGAAATTCACAGGCGCCGGCGGAGGGAGCTCATGATGATTTCATTGATGAAGATCAGGAACCTGTGGTGGATCACCCCATCTGGTACATCCGCACAGTTGGCCTCCAGCCATCAGTCATCAGTGCTATAACCATCTGTAAGTACAAGAGAGGTGACGGCCTTGTTGAAGGTACTGAATGCTCTGTTTGCTTGGCTGAGTTTGAAGAAGATGAGGCCGTTCGCCTTCTTCCTAAGTGTAACCACGCTTTTCACATCCCTTGTATTGATACTTGGCTTAGCTCCCACACAAATTGTCCTATGTGCCGTGCGGGTATCGTTTCTAGCACGGCGGGAGCTCCATCTCCCGAGCAGAGTGTTGAGAATTCAGGTCCTTTGGAGGAAGCCCGGGTGGAAATTCCTGAGAATGGCGGCCAGTTTGAAGAAATAGAAGATGAGGTTTGTGAATTGAGGATTGGGAGAGAGGAAGAAGGCGAGTTAGGGGGGGTGGAGAATGAAAGAAGTAGCTGTGAGGTCGCAAAGGAGGAGGTGGATGAGATACAGCCAATGAGAAGATCAGTTTCCATGGATTCTCTGTCAGCTTCTATGATCAGTCTTGCTCTTGCAAATGTTCATCCCCAAAAAAGCAATGGAAATTCAGACTCACAATTAGCAAATTCGAAGAAATCTATTATGCCTATTGTTCCTAAGAGAGTTGGTGGAAACCAGAGTCGTCCTGCTTCCACTGCTATCACATTGACTATTATGAAAGGCTATTCCTGTGTCAACTTGCCCATAAGCACCTACTTTAGTGCATTGAAGCGTCTCTGGTTGATGGAAAATGTCGATGTTGTGAAAAAAGCAGTTGAAGGGGGGGATATTGTTTGGAACAATAGACAGTTGATTTGGAATATGATAAGAGGCTTGAATGGTGGGGCTCATGTCATTGATGTCTCAAATGCATTTAGAACAATGCTCATAAATCCCAAAACCCTTGATCCTAGGCATTCCTGTTAA 1284 0.465 MEFHHRKLFSDSDNTTEECRWYCDSGSNDSGICPPSCCSDCPLVCSYSTSTRSPPRKAEKLSPYLVICLSVLATTFFVVFLYVFYKKYYSRRRLSRRRNSQAPAEGAHDDFIDEDQEPVVDHPIWYIRTVGLQPSVISAITICKYKRGDGLVEGTECSVCLAEFEEDEAVRLLPKCNHAFHIPCIDTWLSSHTNCPMCRAGIVSSTAGAPSPEQSVENSGPLEEARVEIPENGGQFEEIEDEVCELRIGREEEGELGGVENERSSCEVAKEEVDEIQPMRRSVSMDSLSASMISLALANVHPQKSNGNSDSQLANSKKSIMPIVPKRVGGNQSRPASTAITLTIMKGYSCVNLPISTYFSALKRLWLMENVDVVKKAVEGGDIVWNNRQLIWNMIRGLNGGAHVIDVSNAFRTMLINPKTLDPRHSC* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1147 427 Pfam Ring finger domain 156 199 IPR001841 -
Vvi3g1147 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 206 IPR013083 -
Vvi3g1147 427 SUPERFAMILY Actin-like ATPase domain 348 422 IPR043129 -
Vvi3g1147 427 SUPERFAMILY RING/U-box 151 207 - -
Vvi3g1147 427 FunFam RING-H2 finger protein ATL54 132 205 - -
Vvi3g1147 427 ProSiteProfiles Zinc finger RING-type profile. 157 199 IPR001841 -
Vvi3g1147 427 SMART ring_2 157 198 IPR001841 -
Vvi3g1147 427 PANTHER RING-H2 FINGER PROTEIN ATL16 261 321 IPR044600 GO:0016567|GO:0016740
Vvi3g1147 427 SMART FANCL_C_2 153 207 - -
Vvi3g1147 427 CDD RING-H2_EL5-like 156 199 - -
Vvi3g1147 427 Gene3D - 336 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1147 Vvi-Chr3 15529867 15532548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1147 69 274 C3H Transcription Factor Family AT1G72220 45.205 3.13e-48 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1147 - - vvi:100257251 619.772