Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1142 ATGTCGTTTATGAGAAGAGTGATATTTTCATGCCATCTCATGCCGGAAATCATGTGCTCTGAGTTGAGGATCTCGGGTCTGGCTGATACCATCCGTGGCGCTAAGGAAGCTCAGAGGAGCAACAGTCGCGAGTTTCGTCTCCGGCGACGCCCACTGAAGAAGTCCAATGTTTTTTTCTCTTCAGAATCACCCCGTCTGCACCACCGCTGCCGTCACCACCGCGAGCATCAGTCGTCCATCCACTCATCGGACGATCAGAAATCTCATGGCCTGGGACAGAGCCTCTCACCTCTGCTTGAGCGCACTCTAGATCACCTAGCTCCTCATGCTCGGCTGGAGAACAGAAATTGGGTGGAATCATCCAAAGTTGCTGCTCTTTTGCTTGAACTAGAAAATCTCTGCTCTGTAGGTTCCAAAAGTATTTTATTTAGCCAGTGGACTGCCTTTCTCGACCTCTTGCAGATTCCCCTTTCTCGGAGTAACATATCATTTGTTCGTCTGGATGGAACTCTGAATCAGCAGCAACGGGAAAAAGTGATTAAACAATTCTCAGAGGAAAGCCACATCCTGGTCTTGCTAATGTCATTGAAGGCTGGTGGAGTTGGAATAAACCTAATGGCTGCGTCCCATGCCTTTGTTTTGGATCCATGGTGGAATCCAGCTGTAGAGGAACAAGCTGTTATGCGCATTCATCGTATTGGACAAACAAAAAGGGTAATGATCAAGCGGTTCATCGCGAAGGGAACAATACAGAGGAGTGCACTGATTGCTTCAAAGATGCAAAGTAGAACAACATGA 798 0.4774 MSFMRRVIFSCHLMPEIMCSELRISGLADTIRGAKEAQRSNSREFRLRRRPLKKSNVFFSSESPRLHHRCRHHREHQSSIHSSDDQKSHGLGQSLSPLLERTLDHLAPHARLENRNWVESSKVAALLLELENLCSVGSKSILFSQWTAFLDLLQIPLSRSNISFVRLDGTLNQQQREKVIKQFSEESHILVLLMSLKAGGVGINLMAASHAFVLDPWWNPAVEEQAVMRIHRIGQTKRVMIKRFIAKGTIQRSALIASKMQSRTT* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1142 265 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 52 252 - -
Vvi3g1142 265 CDD SF2_C_SNF 118 245 - -
Vvi3g1142 265 Pfam Helicase conserved C-terminal domain 127 234 IPR001650 -
Vvi3g1142 265 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 122 265 IPR001650 -
Vvi3g1142 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 252 IPR027417 -
Vvi3g1142 265 Gene3D - 35 263 IPR027417 -
Vvi3g1142 265 SMART helicmild6 151 234 IPR001650 -
Vvi3g1142 265 MobiDBLite consensus disorder prediction 63 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1142 Vvi-Chr3 15405717 15406794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1142 115 251 RAD5 or RAD16-like Gene Family AT5G22750 82.482 4.80e-72 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1142 K15505 - vvi:100246473 258.07