Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1132 ATGCCTCGCAAAGGAAACTATCAAGCTGATTATTATGACAAAGATTATGATTATGAGGATTATGAGGATTATGATTATGATCTTGATGTAGAAGAAAATGGAGAAGCTGTTGAGACAAACCAGGAAACTGTTCGGCGTGGGATTTGGCGTTGCTCAATTTGCACATTTGATAATGATGAGAGTATGTCTGCATGTGATATTTGTGGGGTTCTTCGCTATCCTTTGGTTAACATTCGCAACAATAATGATACAAAAACAGCTGATGGCATATGCAAAGATTCTGGAGCATCTATAATGGCCAAGTCTCTTTTTGCACAATTGCCGCATCGGACACTGAAAAAGGCTGTGATCTTTCAACTACAGAATGATGATGTTGTGATAGAAGAGAGCTCTAACTTCCAAAAGCATGGGAATATCCAAGGACAATTTCACGAGGTCCATAAGGCTTTTAGCTTTCATGGACTTCACCATATCAATATAGCCCCTTTCAAGTTTGATGTTCCTTCTCCAGATGAATTAGTTTCTAACGGAATGCATGCCTCCAAAATGGCTTCAAAAGCCAATCTCACCACTTCAGTATCTTCTGAAGTTCCGTCAAGAGTCATTGATAAGCATGGTTTAGTTAATAAACAATCTAGTGCTAAAAGATCAGATAGGTCCTCTGATTTGATGCCAAAAGGCAGACATGAAAATGTGGGTGACAGAGACTTTTCAGAGAGTGGTGCAGCAAATACAGAGTCAAGTGCTAAAGGTTCAGATAGCTCATCCATGTTGATGCCAAAAGGAAGAAATAATAGCAAGGATGAAAGCAATATTTCTTCAATTGACAAAAACAAACGTCAAAGTATTTCTGGCAATTTGTTGTCCAGTATGACTTTGAATGTTAAATCTGAACACTCAAAGAGCAGTAGTGCTGGAAAATCAGTTTCAGATGTGCACTATAAGCCCGAGAAATGGATGATCCCTGATCAAGAAAACGATGTTCTGACTCAATTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGGAAATCAACTCTCTCAGGAAGACTGCTACACCTATTGGGACGAATATCCCAAAAAGAAATGCACAAATATGAGAAAGAGGCTAAACTACAGGGCAAGGGTTCGTTTGCTTATGCTTGGGCATTGGATGAGAGCACGGAAGAAAGGGAAAGGGGCATAACTATGACTGTAGCTGTTGCTTATTTTGACTCCAAAAAGTATCATGTTGTTGTGCTTGACTCCCCAGGTCATAAAGATTTTGTTCCAAACATGATTTCTGGCGCAACACAAGCAGATTCTGCAATTCTCGTTATAGATGCCTCAATTGGTGCATTCGAAGCAGGTGTGGATAGTACTGGAGGGCAAACAAGGGAACATGCACAACTTATTAGAAGTTTTGGTGTTGATCAAATTATAGTTGCGGTTAACAAAATGGATGCTGTGGAATACTCCAAGGAACGGTTTGATTTCATCAAAATGCAGCTTGGAACTTTTCTCCGTTCTTGTGGTTTCAAGGATTCTTCTGTCTCCTGGATTCCATTGAGTGCCATGGAAAATCAAAATCTGGTGGAAGCAGCTTCTGATGCTCGTTTGTCATCCTGGTATCAAGGACCTTACCTGTTGGATGCTATAGATTCCCTCCAACCTCCCACAAGAGATTTTTCAAAGCCTCTACTTATGCCAATATGTGATGTCATCAAACCATCATCATCAGGACAGGTGTCTGCATGTGGTAAATTGGAGGCTGGAGCTCTTCGAAGTGGGTTCAAGGTTCTAGTCATGCCATCTGGAGATGTGGCAACAGTGCGTTCCCTAGAACGTGACTCTCAGACTTGTGCCATTGCAAGAGCAGGAGATAATGTGGCTGTTTGTCTACAAGGTATTGATGGAAGTAATGTGATGGCTGGTGGTGTGCTTTGTCAGCCAGACTTTCCAGTTGCGGTTGCAACTCGTTTGGAGCTGAAGGTTCTTGTCTTGGATATTAAAACCCCAATTTTAATGGGCTCTCAGTTGGAATTTCACACACACCATTCAAAGGAGGCTGCAACAATTGTAAAGATACTGTCGTTGCTCGATCCAAAGACTGGAAAAGTAACGAAGACAGCTCCCCGTTGTGTAACAGCAAAGCAGAGTGCAGTACTGGAGGTGGCTTTGAGTGGAGCAGTATGCGTGGAAGAGTTCTCAAATTGCAGAGCTCTTGGGAGAGCGTTTTTAAGAGCAATGGGAAGAACTCTTGCTGTAGGCATTGTAACCCGAGTAATAAAGGACCATGAATAG 2283 0.4161 MPRKGNYQADYYDKDYDYEDYEDYDYDLDVEENGEAVETNQETVRRGIWRCSICTFDNDESMSACDICGVLRYPLVNIRNNNDTKTADGICKDSGASIMAKSLFAQLPHRTLKKAVIFQLQNDDVVIEESSNFQKHGNIQGQFHEVHKAFSFHGLHHINIAPFKFDVPSPDELVSNGMHASKMASKANLTTSVSSEVPSRVIDKHGLVNKQSSAKRSDRSSDLMPKGRHENVGDRDFSESGAANTESSAKGSDSSSMLMPKGRNNSKDESNISSIDKNKRQSISGNLLSSMTLNVKSEHSKSSSAGKSVSDVHYKPEKWMIPDQENDVLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWALDESTEERERGITMTVAVAYFDSKKYHVVVLDSPGHKDFVPNMISGATQADSAILVIDASIGAFEAGVDSTGGQTREHAQLIRSFGVDQIIVAVNKMDAVEYSKERFDFIKMQLGTFLRSCGFKDSSVSWIPLSAMENQNLVEAASDARLSSWYQGPYLLDAIDSLQPPTRDFSKPLLMPICDVIKPSSSGQVSACGKLEAGALRSGFKVLVMPSGDVATVRSLERDSQTCAIARAGDNVAVCLQGIDGSNVMAGGVLCQPDFPVAVATRLELKVLVLDIKTPILMGSQLEFHTHHSKEAATIVKILSLLDPKTGKVTKTAPRCVTAKQSAVLEVALSGAVCVEEFSNCRALGRAFLRAMGRTLAVGIVTRVIKDHE* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1132 760 FunFam Elongation factor 1 alpha-like protein 321 553 - -
Vvi3g1132 760 MobiDBLite consensus disorder prediction 187 284 - -
Vvi3g1132 760 MobiDBLite consensus disorder prediction 209 236 - -
Vvi3g1132 760 Gene3D - 321 553 IPR027417 -
Vvi3g1132 760 Pfam Elongation factor Tu C-terminal domain 648 755 IPR004160 -
Vvi3g1132 760 SUPERFAMILY Translation proteins 557 681 IPR009000 -
Vvi3g1132 760 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vvi3g1132 760 Gene3D Translation factors 556 647 - -
Vvi3g1132 760 MobiDBLite consensus disorder prediction 238 269 - -
Vvi3g1132 760 CDD HBS1_C_III 647 755 - -
Vvi3g1132 760 CDD EF1_alpha 333 552 - -
Vvi3g1132 760 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 652 756 IPR009001 -
Vvi3g1132 760 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vvi3g1132 760 Gene3D Translation factors 648 755 - -
Vvi3g1132 760 SMART zf_4 47 71 IPR001876 -
Vvi3g1132 760 FunFam elongation factor 1-alpha isoform X4 650 759 - -
Vvi3g1132 760 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vvi3g1132 760 PANTHER TRANSLATION FACTOR 328 756 - -
Vvi3g1132 760 PRINTS GTP-binding elongation factor signature 333 346 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 PRINTS GTP-binding elongation factor signature 392 400 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 PRINTS GTP-binding elongation factor signature 412 422 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 PRINTS GTP-binding elongation factor signature 428 439 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 PRINTS GTP-binding elongation factor signature 473 482 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 329 560 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 FunFam Translation elongation factor EF-1 556 646 - -
Vvi3g1132 760 Pfam Elongation factor Tu GTP binding domain 332 548 IPR000795 GO:0003924|GO:0005525
Vvi3g1132 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 571 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1132 Vvi-Chr3 15160995 15174429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1132 46 82 Eukaryotic Initiation Factors Gene Family AT5G10630 56.757 1.24e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1132 K14416 - vvi:100262342 1155.97