Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1125 ATGTCGCGGCAGAAGATTCAGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGACCTTCTCAAAGAGGAGAAGAGGGCTTTTTAAGAAAGCACAGGAGCTCTCAACACTGTGTGATGCTGAGATAGCGCATATTGTCTTCTCAGCAGCAGGAAAGTTCTTTGAGTATTCAAGCTCAAGAAGATTCGGATCAAGAAGATTGACAACACAGCAGCAAGGCAAGTGA 228 0.4474 MSRQKIQIKKIDNTAARQVTFSKRRRGLFKKAQELSTLCDAEIAHIVFSAAGKFFEYSSSRRFGSRRLTTQQQGK* 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1125 75 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi3g1125 75 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi3g1125 75 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi3g1125 75 SUPERFAMILY SRF-like 1 61 IPR036879 GO:0003677|GO:0046983
Vvi3g1125 75 FunFam Uncharacterized protein 13 67 - -
Vvi3g1125 75 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi3g1125 75 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi3g1125 75 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Vvi3g1125 75 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Vvi3g1125 75 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1125 Vvi-Chr3 14893223 14893704 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1125 1 61 MADS-box Gene Family AT4G24540 75.410 3.57e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi3g1125 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1125 - - vvi:100853161 110.538